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GENE CARD

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  1. Gene 'Boleac.CG.SB_v3.S800...' > 

Gene Card

Best human hits

GABBR2; SMC1A; SMC1B

Species

P.mammillata

Unique Gene ID

Phmamm.g00000656

Gene Model ID

Phmamm.CG.MTP2014.S15.g00656

Location

S15:317010..323036

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S15.g00656.01.t
Phmamm.CG.MTP2014.S15.g00656.02.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
SMC1A_metazoan PANTHER Structural maintenance of chromosomes protein 1A, metazoan
GPCR3_GABA-B PANTHER GPCR family 3, GABA-B receptor
GPCR_3_C ProSiteProfiles GPCR family 3, C-terminal
GPCR_3_C Pfam GPCR family 3, C-terminal

GOSlim

31 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
RNA binding Blast molecular function
signal transducer activity Blast molecular function
G-protein coupled receptor activity Blast molecular function
protein binding Blast molecular function
ATP binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
plasma membrane Blast cellular component
integral component of plasma membrane Blast cellular component
DNA repair InterProScan biological process
G-protein coupled receptor signaling pathway InterProScan biological process
membrane Blast cellular component
integral component of membrane Blast cellular component
cell junction Blast cellular component
neuron projection Blast cellular component
macromolecular complex binding Blast molecular function
synapse Blast cellular component
postsynaptic membrane Blast cellular component
protein heterodimerization activity Blast molecular function
intracellular organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
macromolecular complex Blast cellular component
nuclear lumen Blast cellular component
binding Blast molecular function
cytoskeletal part Blast cellular component
microtubule cytoskeleton Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

38 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 117 3.55e-29
chromosome, centromeric region Hs cellular component 117 3.55e-29
kinetochore Hs cellular component 117 3.55e-29
condensed chromosome kinetochore Hs cellular component 117 3.55e-29
condensed nuclear chromosome Hs cellular component 117 3.55e-29
synaptonemal complex Hs cellular component 92.8 7.58e-21
lateral element Hs cellular component 92.8 7.58e-21
DNA binding Hs molecular function 92.8 7.58e-21
chromatin binding Hs molecular function 117 3.55e-29
RNA binding Hs molecular function 117 3.55e-29
signal transducer activity Hs molecular function 39.3 0.003
G-protein coupled receptor activity Hs molecular function 39.3 0.003
G-protein coupled GABA receptor activity Hs molecular function 39.3 0.003
protein binding Hs molecular function 117 3.55e-29
ATP binding Hs molecular function 117 3.55e-29
nucleus Hs cellular component 117 3.55e-29
nucleoplasm Hs cellular component 117 3.55e-29
chromosome Hs cellular component 117 3.55e-29
cytoplasm Hs cellular component 39.3 0.003
cytosol Hs cellular component 117 3.55e-29
plasma membrane Hs cellular component 39.3 0.003
integral component of plasma membrane Hs cellular component 39.3 0.003
cohesin complex Hs cellular component 117 3.55e-29
membrane Hs cellular component 39.3 0.003
integral component of membrane Hs cellular component 39.3 0.003
nuclear matrix Hs cellular component 117 3.55e-29
cell junction Hs cellular component 39.3 0.003
meiotic cohesin complex Hs cellular component 117 3.55e-29
nuclear meiotic cohesin complex Hs cellular component 92.8 7.58e-21
mediator complex binding Hs molecular function 117 3.55e-29
G-protein coupled receptor heterodimeric complex Hs cellular component 39.3 0.003
neuron projection Hs cellular component 39.3 0.003
macromolecular complex binding Hs molecular function 117 3.55e-29
synapse Hs cellular component 39.3 0.003
postsynaptic membrane Hs cellular component 39.3 0.003
protein heterodimerization activity Hs molecular function 117 3.55e-29
mitotic spindle pole Hs cellular component 117 3.55e-29
GABA receptor complex Hs cellular component 39.3 0.003

GO (InterProScan)

8 results

GO Term Analysis Type e-value
chromatin binding PANTHER molecular function 5.8E-32
G-protein coupled receptor activity Pfam molecular function 1.2E-24
G-protein coupled GABA receptor activity PANTHER molecular function 3.0E-57
DNA repair PANTHER biological process 5.8E-32
mitotic sister chromatid cohesion PANTHER biological process 5.8E-32
G-protein coupled receptor signaling pathway PANTHER biological process 3.0E-57
cohesin complex PANTHER cellular component 5.8E-32
integral component of membrane PANTHER cellular component 3.0E-57

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