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GENE CARD

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Gene Card

Best human hits

COL4A1; COL4A2; COL4A6

Species

P.mammillata

Unique Gene ID

Phmamm.g00004442

Gene Model ID

Phmamm.CG.MTP2014.S159.g04442

Location

S159:93397..109860

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

23 results

AHC0AAA1YK20

Plate: Plate_1_K20

AHC0AAA10YM09

Plate: Plate_10_M09

AHC0AAA12YB19

Plate: Plate_12_B19

AHC0AAA16YA19

Plate: Plate_16_A19

AHC0AAA16YJ03

Plate: Plate_16_J03

AHC0AAA7YD09

Plate: Plate_7_D09

AHC0AAA57YG20

Plate: Plate_57_G20

AHC0AAA66YB22

Plate: Plate_66_B22

AHC0AAA73YB17

Plate: Plate_73_B17

AHC0AAA73YL01

Plate: Plate_73_L01

AHC0AAA100YI23

Plate: Plate_100_I23

AHC0AAA105YC16

Plate: Plate_105_C16

AHC0AAA128YF05

Plate: Plate_128_F05

AHC0AAA129YH07

Plate: Plate_129_H07

AHC0AAA129YI19

Plate: Plate_129_I19

AHC0AAA139YE12

Plate: Plate_139_E12

AHC0AAA96YD04

Plate: Plate_96_D04

AHC0AAA179YL07

Plate: Plate_179_L07

AHC0AAA235YC04

Plate: Plate_235_C04

AHC0AAA253YF03

Plate: Plate_253_F03

AHC0AAA253YN05

Plate: Plate_253_N05

AHC0AAA264YE11

Plate: Plate_264_E11

AHC0AAA264YE13

Plate: Plate_264_E13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
CTDL_fold SUPERFAMILY C-type lectin fold
Collagen_IV_NC_sf Gene3D Collagen IV, non-collagenous domain superfamily
Collagen_IV_NC ProSiteProfiles Collagen IV, non-collagenous
Collagen_IV_NC Pfam Collagen IV, non-collagenous
Collagen Pfam Collagen triple helix repeat
Collagen_IV_NC SMART Collagen IV, non-collagenous

GOSlim

21 results

GO Term Annotation Origin Type
angiogenesis Orthology biological process
structural molecule activity Orthology molecular function
protein binding Orthology molecular function
extracellular region Orthology cellular component
extracellular space Orthology cellular component
endoplasmic reticulum lumen Orthology cellular component
transcription, DNA-templated Orthology biological process
cell adhesion Orthology biological process
extracellular matrix organization Orthology biological process
extracellular exosome Orthology cellular component
extracellular region part Orthology cellular component
macromolecular complex Orthology cellular component
developmental process Orthology biological process
response to stimulus Orthology biological process
catabolic process Orthology biological process
anatomical structure formation involved in morphogenesis Orthology biological process
multicellular organism development Orthology biological process
cell differentiation Orthology biological process
cell surface receptor signaling pathway Orthology biological process
cellular response to organic substance Orthology biological process
animal organ development Orthology biological process

GO (Orthology)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
angiogenesis Hs biological process
structural molecule activity Hs molecular function
extracellular matrix structural constituent Hs molecular function
protein binding Hs molecular function
extracellular region Hs cellular component
proteinaceous extracellular matrix Hs cellular component
collagen trimer Hs cellular component
collagen type IV trimer Hs cellular component
basement membrane Hs cellular component
extracellular space Hs cellular component
endoplasmic reticulum lumen Hs cellular component
transcription, DNA-templated Hs biological process
cell adhesion Hs biological process
aging Hs biological process
response to activity Hs biological process
negative regulation of angiogenesis Hs biological process
extracellular matrix organization Hs biological process
collagen catabolic process Hs biological process
extracellular matrix Hs cellular component
endodermal cell differentiation Hs biological process
collagen-activated tyrosine kinase receptor signaling pathway Hs biological process
extracellular exosome Hs cellular component
cellular response to amino acid stimulus Hs biological process
cellular response to transforming growth factor beta stimulus Hs biological process
basal lamina Hs cellular component
glomerular basement membrane development Hs biological process

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
structural molecule activity Hs molecular function 693 0.0
extracellular matrix structural constituent Hs molecular function 693 0.0
protein binding Hs molecular function 622 0.0
extracellular region Hs cellular component 693 0.0
proteinaceous extracellular matrix Hs cellular component 693 0.0
collagen trimer Hs cellular component 693 0.0
collagen type IV trimer Hs cellular component 693 0.0
basement membrane Hs cellular component 693 0.0
extracellular space Hs cellular component 622 0.0
endoplasmic reticulum lumen Hs cellular component 693 0.0
extracellular matrix constituent conferring elasticity Hs molecular function 556 8.77e-169
extracellular matrix Hs cellular component 622 0.0
platelet-derived growth factor binding Hs molecular function 556 8.77e-169
extracellular exosome Hs cellular component 622 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
extracellular matrix structural constituent Gene3D molecular function 7.2E-109
collagen trimer Gene3D cellular component 7.2E-109