Aniseed - Gene card

Gene Card

Best human hits

TBX20; TBX4; TBX6

Species

P.mammillata

Unique Gene ID

Phmamm.g00015325

Gene Model ID

Phmamm.CG.MTP2014.S1645.g15325

Location

S1645:766..3452

Transcript Models and Sequences

Phmamm.CG.MTP2014.S1645.g15325.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
TF_T-box	SMART	Transcription factor, T-box
p53-like_TF_DNA-bd	SUPERFAMILY	p53-like transcription factor, DNA-binding
TF_T-box	Pfam	Transcription factor, T-box
TF_T-box	CDD	Transcription factor, T-box
T-box_sf	Gene3D	T-box superfamily
TF_T-box	ProSiteProfiles	Transcription factor, T-box
TF_T-box	PRINTS	Transcription factor, T-box
TF_T-box	PANTHER	Transcription factor, T-box

GOSlim

10 results

GO Term	Annotation Origin	Type
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
cytoplasm	Blast	cellular component
regulation of transcription, DNA-templated	InterProScan	biological process
transcription factor binding	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	194	3.51e-57
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	194	3.51e-57
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	202	3.01e-60
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	202	3.01e-60
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	194	3.51e-57
RNA polymerase II transcription factor binding	Hs	molecular function	202	3.01e-60
RNA polymerase II activating transcription factor binding	Hs	molecular function	202	3.01e-60
RNA polymerase II transcription coactivator activity	Hs	molecular function	194	3.51e-57
transcriptional repressor activity, RNA polymerase II transcription factor binding	Hs	molecular function	202	3.01e-60
DNA binding	Hs	molecular function	202	3.01e-60
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	202	3.01e-60
protein binding	Hs	molecular function	202	3.01e-60
nucleus	Hs	cellular component	202	3.01e-60
cytoplasm	Hs	cellular component	194	3.51e-57

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
transcription factor activity, sequence-specific DNA binding	PANTHER	molecular function	1.4E-97
nucleus	PANTHER	cellular component	1.4E-97
regulation of transcription, DNA-templated	PANTHER	biological process	1.4E-97