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Gene Card

Best human hits

RBM10; RBM5; TFIP11

Species

P.mammillata

Unique Gene ID

Phmamm.g00000739

Gene Model ID

Phmamm.CG.MTP2014.S18.g00739

Location

S18:39625..48422

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S18.g00739.01.t
Phmamm.CG.MTP2014.S18.g00739.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

11 results

AHC0AAA19YD10

Plate: Plate_19_D10

AHC0AAA23YM15

Plate: Plate_23_M15

AHC0AAA42YI16

Plate: Plate_42_I16

AHC0AAA53YP07

Plate: Plate_53_P07

AHC0AAA115YB14

Plate: Plate_115_B14

AHC0AAA158YN21

Plate: Plate_158_N21

AHC0AAA158YO21

Plate: Plate_158_O21

AHC0AAA213YI01

Plate: Plate_213_I01

AHC0AAA223YO04

Plate: Plate_223_O04

AHC0AAA243YA13

Plate: Plate_243_A13

AHC0AAA262YB22

Plate: Plate_262_B22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
G_patch_dom SMART G-patch domain
G_patch_dom ProSiteProfiles G-patch domain
GCFC_dom Pfam GC-rich sequence DNA-binding factor-like domain
STIP/TFIP11_N Pfam Tuftelin interacting protein, N-terminal domain
G_patch_dom Pfam G-patch domain
STIP PIRSF Septin and tuftelin interacting protein

GOSlim

24 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
DNA binding Blast molecular function
RNA binding Blast molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
RNA processing Orthology biological process
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear speck Orthology cellular component
identical protein binding Blast molecular function
macromolecular complex binding Blast molecular function
metal ion binding Blast molecular function
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
cellular response to DNA damage stimulus Orthology biological process
DNA metabolic process Orthology biological process
organelle organization Orthology biological process
regulation of molecular function Orthology biological process

GO (Orthology)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
spliceosomal complex disassembly Hs biological process
mRNA splicing, via spliceosome Hs biological process
nuclear chromosome, telomeric region Hs cellular component
nucleic acid binding Hs molecular function
protein binding Hs molecular function
proteinaceous extracellular matrix Hs cellular component
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
RNA processing Hs biological process
mRNA processing Hs biological process
RNA splicing Hs biological process
nuclear speck Hs cellular component
negative regulation of protein complex assembly Hs biological process
protection from non-homologous end joining at telomere Hs biological process
negative regulation of protein binding Hs biological process
U2-type post-mRNA release spliceosomal complex Hs cellular component
catalytic step 2 spliceosome Hs cellular component

GO (Blast)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromosome, telomeric region Hs cellular component 564 0.0
nucleic acid binding Hs molecular function 564 0.0
DNA binding Hs molecular function 56.6 5.05e-08
RNA binding Hs molecular function 58.9 8.55e-09
mRNA binding Hs molecular function 56.6 5.05e-08
protein binding Hs molecular function 564 0.0
proteinaceous extracellular matrix Hs cellular component 564 0.0
nucleus Hs cellular component 564 0.0
nucleoplasm Hs cellular component 564 0.0
spliceosomal complex Hs cellular component 564 0.0
nucleolus Hs cellular component 564 0.0
cytoplasm Hs cellular component 564 0.0
nuclear speck Hs cellular component 564 0.0
miRNA binding Hs molecular function 58.9 8.55e-09
identical protein binding Hs molecular function 58.9 8.55e-09
macromolecular complex binding Hs molecular function 58.9 8.55e-09
metal ion binding Hs molecular function 58.9 8.55e-09
U2-type post-mRNA release spliceosomal complex Hs cellular component 564 0.0
catalytic step 2 spliceosome Hs cellular component 564 0.0

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 9.3E-19

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