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GENE CARD

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Gene Card

Best human hits

FIBCD1; TNR; TNXB

Species

P.mammillata

Unique Gene ID

Phmamm.g00015711

Gene Model ID

Phmamm.CG.MTP2014.S1821.g15711

Location

S1821:1372..3600

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S1821.g15711.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

1 result

AHC0AAA154YG06

Plate: Plate_154_G06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Fibrinogen_a/b/g_C_dom Pfam Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
Fibrinogen_a/b/g_C_dom ProSiteProfiles Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
Fibrinogen_a/b/g_C_dom SMART Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
Fibrinogen-like_C SUPERFAMILY Fibrinogen-like, C-terminal

GOSlim

15 results

GO Term Annotation Origin Type
integrin binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
intracellular Blast cellular component
cell surface Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
membrane raft Blast cellular component
metal ion binding Blast molecular function
extracellular exosome Blast cellular component
extracellular region part Blast cellular component
macromolecular complex Blast cellular component
carbohydrate derivative binding Blast molecular function
anion binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
integrin binding Hs molecular function 112 3.79e-28
protein binding Hs molecular function 113 9.07e-29
extracellular region Hs cellular component 113 9.07e-29
proteinaceous extracellular matrix Hs cellular component 113 9.07e-29
fibrillar collagen trimer Hs cellular component 112 3.79e-28
extracellular space Hs cellular component 112 3.79e-28
intracellular Hs cellular component 112 3.79e-28
chitin binding Hs molecular function 111 2.15e-28
heparin binding Hs molecular function 112 3.79e-28
cell surface Hs cellular component 113 9.07e-29
membrane Hs cellular component 111 2.15e-28
integral component of membrane Hs cellular component 111 2.15e-28
extracellular matrix Hs cellular component 112 3.79e-28
membrane raft Hs cellular component 113 9.07e-29
metal ion binding Hs molecular function 111 2.15e-28
extracellular exosome Hs cellular component 112 3.79e-28
perineuronal net Hs cellular component 113 9.07e-29

GO (InterProScan)

No result

GO Term Analysis Type e-value