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Gene Card

Best human hits

METTL27; SYNE1; SYNE2

Species

P.mammillata

Unique Gene ID

Phmamm.g00005056

Gene Model ID

Phmamm.CG.MTP2014.S190.g05056

Location

S190:135663..193868

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S190.g05056.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

3 results

AHC0AAA76YN08

Plate: Plate_76_N08

AHC0AAA94YH15

Plate: Plate_94_H15

AHC0AAA94YJ18

Plate: Plate_94_J18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Spectrin/alpha-actinin SMART Spectrin/alpha-actinin
Spectrin_repeat Pfam Spectrin repeat
SAM-dependent_MTases SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferase
SYNE1 PANTHER Nesprin-1

GOSlim

41 results

GO Term Annotation Origin Type
RNA binding Blast molecular function
actin binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nuclear envelope Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
cytoplasm Blast cellular component
mitochondrion Blast cellular component
Golgi apparatus Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
focal adhesion Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
enzyme binding Blast molecular function
cell junction Blast cellular component
nuclear membrane Blast cellular component
nuclear lumen Blast cellular component
protein homodimerization activity Blast molecular function
postsynaptic membrane Blast cellular component
actin filament binding Blast molecular function
extracellular exosome Blast cellular component
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
macromolecular complex Blast cellular component
membrane part Blast cellular component
whole membrane Blast cellular component
nuclear outer membrane-endoplasmic reticulum membrane network Blast cellular component
bounding membrane of organelle Blast cellular component
intracellular part Blast cellular component
endoplasmic reticulum Blast cellular component
organelle part Blast cellular component
lamellipodium Blast cellular component
cell projection membrane Blast cellular component
cytoskeletal part Blast cellular component
endoplasmic reticulum membrane Blast cellular component
intrinsic component of membrane Blast cellular component
organelle organization InterProScan biological process
cell InterProScan cellular component
cellular protein localization InterProScan biological process

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

36 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
P-body Hs cellular component 1084 0.0
RNA binding Hs molecular function 1084 0.0
actin binding Hs molecular function 1084 0.0
protein binding Hs molecular function 1084 0.0
lamin binding Hs molecular function 1084 0.0
nucleus Hs cellular component 1084 0.0
nuclear envelope Hs cellular component 1084 0.0
nuclear outer membrane Hs cellular component 1084 0.0
nucleoplasm Hs cellular component 1084 0.0
nucleolus Hs cellular component 1084 0.0
cytoplasm Hs cellular component 1084 0.0
mitochondrion Hs cellular component 200 2.22e-50
Golgi apparatus Hs cellular component 1084 0.0
cytoskeleton Hs cellular component 1084 0.0
plasma membrane Hs cellular component 200 2.22e-50
focal adhesion Hs cellular component 200 2.22e-50
membrane Hs cellular component 1084 0.0
integral component of membrane Hs cellular component 1084 0.0
aggresome Hs cellular component 200 2.22e-50
sarcoplasmic reticulum Hs cellular component 200 2.22e-50
enzyme binding Hs molecular function 1084 0.0
myofibril Hs cellular component 200 2.22e-50
sarcomere Hs cellular component 1084 0.0
Z disc Hs cellular component 200 2.22e-50
cell junction Hs cellular component 200 2.22e-50
lamellipodium membrane Hs cellular component 200 2.22e-50
filopodium membrane Hs cellular component 200 2.22e-50
nuclear membrane Hs cellular component 1084 0.0
nuclear lumen Hs cellular component 200 2.22e-50
sarcoplasmic reticulum membrane Hs cellular component 200 2.22e-50
LINC complex Hs cellular component 1084 0.0
protein homodimerization activity Hs molecular function 1084 0.0
intermediate filament cytoskeleton Hs cellular component 200 2.22e-50
postsynaptic membrane Hs cellular component 1084 0.0
actin filament binding Hs molecular function 1084 0.0
extracellular exosome Hs cellular component 200 2.22e-50

GO (InterProScan)

5 results

GO Term Analysis Type e-value
protein binding Pfam molecular function 1.7E-10
nuclear envelope PANTHER cellular component 0.0
LINC complex PANTHER cellular component 0.0
actin filament binding PANTHER molecular function 0.0
cytoskeletal anchoring at nuclear membrane PANTHER biological process 0.0

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