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GENE CARD

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Gene Card

Best human hits

SNF8

Species

P.mammillata

Unique Gene ID

Phmamm.g00005098

Gene Model ID

Phmamm.CG.MTP2014.S193.g05098

Location

S193:51629..53388

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

47 results

AHC0AAA13YK18

Plate: Plate_13_K18

AHC0AAA16YP02

Plate: Plate_16_P02

AHC0AAA7YI08

Plate: Plate_7_I08

AHC0AAA41YN23

Plate: Plate_41_N23

AHC0AAA46YB24

Plate: Plate_46_B24

AHC0AAA48YH13

Plate: Plate_48_H13

AHC0AAA50YK17

Plate: Plate_50_K17

AHC0AAA55YO14

Plate: Plate_55_O14

AHC0AAA70YF16

Plate: Plate_70_F16

AHC0AAA71YB16

Plate: Plate_71_B16

AHC0AAA79YJ07

Plate: Plate_79_J07

AHC0AAA105YG07

Plate: Plate_105_G07

AHC0AAA106YJ14

Plate: Plate_106_J14

AHC0AAA111YL12

Plate: Plate_111_L12

AHC0AAA116YK03

Plate: Plate_116_K03

AHC0AAA119YD18

Plate: Plate_119_D18

AHC0AAA133YO04

Plate: Plate_133_O04

AHC0AAA140YM11

Plate: Plate_140_M11

AHC0AAA147YH22

Plate: Plate_147_H22

AHC0AAA149YN10

Plate: Plate_149_N10

AHC0AAA84YH15

Plate: Plate_84_H15

AHC0AAA87YB04

Plate: Plate_87_B04

AHC0AAA87YC13

Plate: Plate_87_C13

AHC0AAA88YN19

Plate: Plate_88_N19

AHC0AAA89YP02

Plate: Plate_89_P02

AHC0AAA97YB13

Plate: Plate_97_B13

AHC0AAA106YL16

Plate: Plate_106_L16

AHC0AAA133YO02

Plate: Plate_133_O02

AHC0AAA147YJ24

Plate: Plate_147_J24

AHC0AAA177YL06

Plate: Plate_177_L06

AHC0AAA181YG23

Plate: Plate_181_G23

AHC0AAA185YI22

Plate: Plate_185_I22

AHC0AAA203YL03

Plate: Plate_203_L03

AHC0AAA219YC01

Plate: Plate_219_C01

AHC0AAA222YD11

Plate: Plate_222_D11

AHC0AAA230YC05

Plate: Plate_230_C05

AHC0AAA231YG22

Plate: Plate_231_G22

AHC0AAA231YP03

Plate: Plate_231_P03

AHC0AAA236YN15

Plate: Plate_236_N15

AHC0AAA244YO08

Plate: Plate_244_O08

AHC0AAA244YO18

Plate: Plate_244_O18

AHC0AAA249YC08

Plate: Plate_249_C08

AHC0AAA250YA07

Plate: Plate_250_A07

AHC0AAA252YD12

Plate: Plate_252_D12

AHC0AAA259YG17

Plate: Plate_259_G17

AHC0AAA259YI21

Plate: Plate_259_I21

AHC0AAA55YA12

Plate: Plate_55_A12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
ESCRT-2_cplx_Snf8 PANTHER ESCRT-2 complex, Snf8

GOSlim

34 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
endosome Orthology cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
protein C-terminus binding Orthology molecular function
transcription factor binding Orthology molecular function
positive regulation of gene expression Orthology biological process
protein transport Orthology biological process
membrane Orthology cellular component
protein homodimerization activity Orthology molecular function
protein N-terminus binding Orthology molecular function
perinuclear region of cytoplasm Orthology cellular component
regulation of molecular function Orthology biological process
extracellular exosome Orthology cellular component
membrane part Orthology cellular component
intracellular organelle part Orthology cellular component
whole membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
macromolecular complex Orthology cellular component
intracellular part Orthology cellular component
intracellular transport Orthology biological process
cellular component organization Orthology biological process
molecular function regulator Orthology molecular function
protein metabolic process Orthology biological process
intracellular protein transport Orthology biological process
vacuole Orthology cellular component
proteolysis Orthology biological process
establishment of protein localization to organelle Orthology biological process

GO (Orthology)

37 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
ESCRT II complex Hs cellular component
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor complex Hs cellular component
cytoplasm Hs cellular component
endosome Hs cellular component
cytosol Hs cellular component
plasma membrane Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
protein C-terminus binding Hs molecular function
transcription factor binding Hs molecular function
endosome membrane Hs cellular component
positive regulation of gene expression Hs biological process
regulation of multivesicular body size involved in endosome transport Hs biological process
protein transport Hs biological process
membrane Hs cellular component
endosomal transport Hs biological process
macroautophagy Hs biological process
channel regulator activity Hs molecular function
late endosome membrane Hs cellular component
endocytic recycling Hs biological process
multivesicular body assembly Hs biological process
regulation of protein catabolic process Hs biological process
protein homodimerization activity Hs molecular function
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway Hs biological process
early endosome to late endosome transport Hs biological process
positive regulation of protein catabolic process Hs biological process
protein N-terminus binding Hs molecular function
perinuclear region of cytoplasm Hs cellular component
recycling endosome Hs cellular component
regulation of protein complex stability Hs biological process
regulation of molecular function Hs biological process
extracellular exosome Hs cellular component
multivesicular body sorting pathway Hs biological process

GO (Blast)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
ESCRT II complex Hs cellular component 281 3.19e-96
protein binding Hs molecular function 281 3.19e-96
nucleus Hs cellular component 281 3.19e-96
nucleoplasm Hs cellular component 281 3.19e-96
transcription factor complex Hs cellular component 281 3.19e-96
cytoplasm Hs cellular component 281 3.19e-96
endosome Hs cellular component 281 3.19e-96
cytosol Hs cellular component 281 3.19e-96
plasma membrane Hs cellular component 281 3.19e-96
protein C-terminus binding Hs molecular function 281 3.19e-96
transcription factor binding Hs molecular function 281 3.19e-96
endosome membrane Hs cellular component 281 3.19e-96
membrane Hs cellular component 281 3.19e-96
channel regulator activity Hs molecular function 281 3.19e-96
late endosome membrane Hs cellular component 281 3.19e-96
protein homodimerization activity Hs molecular function 281 3.19e-96
protein N-terminus binding Hs molecular function 281 3.19e-96
perinuclear region of cytoplasm Hs cellular component 281 3.19e-96
recycling endosome Hs cellular component 281 3.19e-96
extracellular exosome Hs cellular component 281 3.19e-96

GO (InterProScan)

2 results

GO Term Analysis Type e-value
ESCRT II complex PANTHER cellular component 1.1E-81
multivesicular body sorting pathway PANTHER biological process 1.1E-81