Aniseed - Gene card

Gene Card

Best human hits

FTSJ1; FTSJ3; MRM2

Species

P.mammillata

Unique Gene ID

Phmamm.g00005246

Gene Model ID

Phmamm.CG.MTP2014.S201.g05246

Location

S201:42217..46943

Transcript Models and Sequences

Phmamm.CG.MTP2014.S201.g05246.01.t
Phmamm.CG.MTP2014.S201.g05246.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

8 results

AHC0AAA234YO21

Plate: Plate_234_O21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
RNA_methyltr_E_Trm7	Hamap	tRNA (cytidine(32)/guanosine(34)-2-O)-methyltransferase, Trm7
rRNA-MeTfrase_E	Hamap	Ribosomal RNA large subunit methyltransferase E
rRNA_MeTrfase_FtsJ_dom	Pfam	Ribosomal RNA methyltransferase FtsJ domain
SAM-dependent_MTases	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferase
RNA_methyltr_E_Trm7	PANTHER	tRNA (cytidine(32)/guanosine(34)-2-O)-methyltransferase, Trm7

GOSlim

13 results

GO Term	Annotation Origin	Type
RNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleolus	Blast	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Blast	cellular component
mitochondrial matrix	Blast	cellular component
cytosol	Orthology	cellular component
transferase activity	Orthology	molecular function
RNA metabolic process	Orthology	biological process
RNA processing	Orthology	biological process
metabolic process	Orthology	biological process
macromolecular complex	Blast	cellular component

GO (Orthology)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA methylation	Hs	biological process
cytoplasmic translation	Hs	biological process
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
tRNA modification	Hs	biological process
tRNA processing	Hs	biological process
methyltransferase activity	Hs	molecular function
tRNA methyltransferase activity	Hs	molecular function
tRNA (guanosine-2'-O-)-methyltransferase activity	Hs	molecular function
transferase activity	Hs	molecular function
tRNA methylation	Hs	biological process
methylation	Hs	biological process
tRNA (cytosine-2'-O-)-methyltransferase activity	Hs	molecular function

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	147	3.53e-39
protein binding	Hs	molecular function	147	3.53e-39
nucleus	Hs	cellular component	147	3.53e-39
nucleolus	Hs	cellular component	147	3.53e-39
cytoplasm	Hs	cellular component	427	5.84e-151
mitochondrion	Hs	cellular component	108	1.79e-27
mitochondrial matrix	Hs	cellular component	108	1.79e-27
cytosol	Hs	cellular component	427	5.84e-151
methyltransferase activity	Hs	molecular function	427	5.84e-151
tRNA methyltransferase activity	Hs	molecular function	427	5.84e-151
rRNA methyltransferase activity	Hs	molecular function	147	3.53e-39
rRNA (uridine-2'-O-)-methyltransferase activity	Hs	molecular function	147	3.53e-39
tRNA (guanosine-2'-O-)-methyltransferase activity	Hs	molecular function	427	5.84e-151
rRNA (guanine) methyltransferase activity	Hs	molecular function	147	3.53e-39
transferase activity	Hs	molecular function	427	5.84e-151
preribosome, large subunit precursor	Hs	cellular component	147	3.53e-39
tRNA (cytosine-2'-O-)-methyltransferase activity	Hs	molecular function	427	5.84e-151

GO (InterProScan)