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GENE CARD

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Gene Card

Best human hits

IPO13; XPO1; XPO5

Species

P.mammillata

Unique Gene ID

Phmamm.g00005270

Gene Model ID

Phmamm.CG.MTP2014.S202.g05270

Location

S202:73799..82943

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S202.g05270.01.t
Phmamm.CG.MTP2014.S202.g05270.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

21 results

AHC0AAA40YK12

Plate: Plate_40_K12

AHC0AAA50YI09

Plate: Plate_50_I09

AHC0AAA58YI03

Plate: Plate_58_I03

AHC0AAA66YJ03

Plate: Plate_66_J03

AHC0AAA68YH05

Plate: Plate_68_H05

AHC0AAA69YO19

Plate: Plate_69_O19

AHC0AAA76YB08

Plate: Plate_76_B08

AHC0AAA77YE15

Plate: Plate_77_E15

AHC0AAA106YA20

Plate: Plate_106_A20

AHC0AAA112YL22

Plate: Plate_112_L22

AHC0AAA129YC19

Plate: Plate_129_C19

AHC0AAA135YO14

Plate: Plate_135_O14

AHC0AAA141YO04

Plate: Plate_141_O04

AHC0AAA147YP20

Plate: Plate_147_P20

AHC0AAA99YH10

Plate: Plate_99_H10

AHC0AAA106YA18

Plate: Plate_106_A18

AHC0AAA147YP18

Plate: Plate_147_P18

AHC0AAA181YN24

Plate: Plate_181_N24

AHC0AAA207YB01

Plate: Plate_207_B01

AHC0AAA243YI20

Plate: Plate_243_I20

AHC0AAA252YB06

Plate: Plate_252_B06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
ARM-like Gene3D Armadillo-like helical
CRM1_C_dom SMART CRM1 C-terminal domain
ARM-type_fold SUPERFAMILY Armadillo-type fold
CRM1_C_dom Pfam CRM1 C-terminal domain
Importin-beta_N Pfam Importin-beta, N-terminal domain
Importin-beta_N SMART Importin-beta, N-terminal domain
Importin-beta_N ProSiteProfiles Importin-beta, N-terminal domain
Exportin-1/Importin-b-like Pfam Exportin-1/Importin-beta-like

GOSlim

25 results

GO Term Annotation Origin Type
RNA binding Blast molecular function
binding Blast molecular function
protein binding Blast molecular function
intracellular Blast cellular component
nucleus Blast cellular component
nuclear envelope Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
intracellular protein transport InterProScan biological process
protein transport Blast biological process
membrane Blast cellular component
nuclear membrane Blast cellular component
macromolecular complex Blast cellular component
intracellular membrane-bounded organelle Blast cellular component
intracellular organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
intracellular transport Blast biological process
nuclear outer membrane-endoplasmic reticulum membrane network Blast cellular component
membrane region Blast cellular component
enzyme binding Blast molecular function
nuclear body Blast cellular component
nucleoplasm part Blast cellular component
intracellular part Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

31 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
tRNA binding Hs molecular function 62.8 1.02e-09
kinetochore Hs cellular component 1813 0.0
RNA binding Hs molecular function 1813 0.0
mRNA binding Hs molecular function 62.8 1.02e-09
nuclear export signal receptor activity Hs molecular function 1813 0.0
transporter activity Hs molecular function 1813 0.0
binding Hs molecular function 1813 0.0
protein binding Hs molecular function 1813 0.0
intracellular Hs cellular component 1813 0.0
nucleus Hs cellular component 1813 0.0
nuclear envelope Hs cellular component 1813 0.0
annulate lamellae Hs cellular component 1813 0.0
nucleoplasm Hs cellular component 1813 0.0
nucleolus Hs cellular component 1813 0.0
cytoplasm Hs cellular component 1813 0.0
cytosol Hs cellular component 1813 0.0
nuclear localization sequence binding Hs molecular function 50.8 4.81e-06
Ran GTPase binding Hs molecular function 1813 0.0
protein transporter activity Hs molecular function 1813 0.0
Cajal body Hs cellular component 1813 0.0
membrane Hs cellular component 1813 0.0
protein domain specific binding Hs molecular function 1813 0.0
intracellular ribonucleoprotein complex Hs cellular component 1813 0.0
nuclear membrane Hs cellular component 1813 0.0
macromolecular complex Hs cellular component 1813 0.0
micro-ribonucleoprotein complex Hs cellular component 62.8 1.02e-09
nuclear RNA export factor complex Hs cellular component 62.8 1.02e-09
RNA nuclear export complex Hs cellular component 62.8 1.02e-09
intracellular membrane-bounded organelle Hs cellular component 1813 0.0
host cell Hs cellular component 1813 0.0
pre-miRNA binding Hs molecular function 62.8 1.02e-09

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nuclear export signal receptor activity SMART molecular function 1.6E-207
binding SUPERFAMILY molecular function 2.13E-118
intracellular protein transport Pfam biological process 2.4E-12
Ran GTPase binding Pfam molecular function 2.4E-12

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