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GENE CARD

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Gene Card

Best human hits

CWC22; NOM1

Species

P.mammillata

Unique Gene ID

Phmamm.g00005363

Gene Model ID

Phmamm.CG.MTP2014.S207.g05363

Location

S207:260..4685

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S207.g05363.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

1 result

AHC0AAA19YA08

Plate: Plate_19_A08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
MIF4-like_sf Gene3D MIF4G-like domain superfamily
Initiation_fac_eIF4g_MI Pfam Initiation factor eIF-4 gamma, MA3
ARM-type_fold SUPERFAMILY Armadillo-type fold
MIF4G-like_typ-3 Pfam MIF4G-like, type 3
MIF4G-like_typ-3 SMART MIF4G-like, type 3

GOSlim

10 results

GO Term Annotation Origin Type
RNA binding Blast molecular function
binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
cytosol Blast cellular component
nuclear speck Blast cellular component
nuclear part Blast cellular component
macromolecular complex Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA binding Hs molecular function 600 0.0
binding Hs molecular function 600 0.0
protein binding Hs molecular function 600 0.0
nucleus Hs cellular component 600 0.0
nucleoplasm Hs cellular component 600 0.0
spliceosomal complex Hs cellular component 600 0.0
nucleolus Hs cellular component 79.3 3.14e-15
cytosol Hs cellular component 600 0.0
nuclear speck Hs cellular component 600 0.0
U2-type catalytic step 1 spliceosome Hs cellular component 600 0.0
U2-type catalytic step 2 spliceosome Hs cellular component 600 0.0
catalytic step 2 spliceosome Hs cellular component 600 0.0

GO (InterProScan)

3 results

GO Term Analysis Type e-value
RNA binding SMART molecular function 1.4E-29
binding SUPERFAMILY molecular function 1.11E-54
protein binding SMART molecular function 1.4E-29