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  2. Gene 'Boschl.CG.Botznik201...' > 
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Gene Card

Best human hits

PABPC1; PABPC3; PABPC4

Species

P.mammillata

Unique Gene ID

Phmamm.g00016191

Gene Model ID

Phmamm.CG.MTP2014.S2098.g16191

Location

S2098:9122..15150

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S2098.g16191.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom ProSiteProfiles RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom SMART RNA recognition motif domain
PABP_1234 TIGRFAM Polyadenylate binding protein, human types 1, 2, 3, 4
RRM_dom Pfam RNA recognition motif domain

GOSlim

34 results

GO Term Annotation Origin Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Orthology biological process
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
focal adhesion Orthology cellular component
RNA processing Orthology biological process
mRNA processing Orthology biological process
RNA catabolic process Orthology biological process
translational initiation Orthology biological process
blood coagulation Orthology biological process
protein C-terminus binding Orthology molecular function
RNA splicing Orthology biological process
membrane Orthology cellular component
mRNA metabolic process Orthology biological process
extracellular exosome Orthology cellular component
mitochondrion Orthology cellular component
mitochondrial matrix Orthology cellular component
nuclear-transcribed mRNA catabolic process Orthology biological process
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
positive regulation of gene expression Orthology biological process
cytoplasmic part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
negative regulation of gene expression Orthology biological process
cellular process Orthology biological process
mRNA catabolic process Orthology biological process
cell development Orthology biological process
gamete generation Orthology biological process
organelle organization Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process

GO (Orthology)

45 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Hs biological process
nuclear-transcribed mRNA poly(A) tail shortening Hs biological process
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
mRNA binding Hs molecular function
mRNA 3'-UTR binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
spliceosomal complex Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
focal adhesion Hs cellular component
mRNA polyadenylation Hs biological process
RNA processing Hs biological process
mRNA processing Hs biological process
RNA catabolic process Hs biological process
translation Hs biological process
translational initiation Hs biological process
blood coagulation Hs biological process
protein C-terminus binding Hs molecular function
poly(A) binding Hs molecular function
poly(U) RNA binding Hs molecular function
RNA splicing Hs biological process
translation activator activity Hs molecular function
cytoplasmic stress granule Hs cellular component
membrane Hs cellular component
mRNA metabolic process Hs biological process
intracellular ribonucleoprotein complex Hs cellular component
gene silencing by RNA Hs biological process
cytoplasmic ribonucleoprotein granule Hs cellular component
regulation of mRNA stability Hs biological process
positive regulation of translation Hs biological process
mRNA stabilization Hs biological process
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening Hs biological process
extracellular exosome Hs cellular component
catalytic step 2 spliceosome Hs cellular component
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Hs biological process
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Hs biological process
oocyte maturation Hs biological process
mitochondrion Hs cellular component
mitochondrial matrix Hs cellular component
chromatin remodeling Hs biological process
chromatin-mediated maintenance of transcription Hs biological process
nucleus localization Hs biological process

GO (Blast)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleic acid binding Hs molecular function 559 0.0
RNA binding Hs molecular function 559 0.0
mRNA binding Hs molecular function 547 0.0
mRNA 3'-UTR binding Hs molecular function 559 0.0
protein binding Hs molecular function 559 0.0
nucleus Hs cellular component 559 0.0
spliceosomal complex Hs cellular component 559 0.0
cytoplasm Hs cellular component 559 0.0
cytosol Hs cellular component 559 0.0
focal adhesion Hs cellular component 559 0.0
protein C-terminus binding Hs molecular function 559 0.0
poly(A) binding Hs molecular function 559 0.0
poly(U) RNA binding Hs molecular function 559 0.0
translation activator activity Hs molecular function 559 0.0
cytoplasmic stress granule Hs cellular component 559 0.0
membrane Hs cellular component 559 0.0
intracellular ribonucleoprotein complex Hs cellular component 559 0.0
cytoplasmic ribonucleoprotein granule Hs cellular component 559 0.0
extracellular exosome Hs cellular component 559 0.0
catalytic step 2 spliceosome Hs cellular component 559 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 8.15E-47
RNA binding TIGRFAM molecular function 2.8E-152

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