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Gene Card

Best human hits

PAX2; PAX5; PAX8

Species

P.mammillata

Unique Gene ID

Phmamm.g00000870

Gene Model ID

Phmamm.CG.MTP2014.S21.g00870

Location

S21:29007..30310

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S21.g00870.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Paired_dom PRINTS Paired domain
Paired_dom Pfam Paired domain
Paired_dom ProSiteProfiles Paired domain
Paired_dom ProSitePatterns Paired domain
Paired_dom SMART Paired domain
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily

GOSlim

24 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
core promoter proximal region sequence-specific DNA binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
lysosome Blast cellular component
Golgi apparatus Blast cellular component
microtubule organizing center Blast cellular component
cytosol Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
transcription factor binding Blast molecular function
macromolecular complex Blast cellular component
intracellular membrane-bounded organelle Blast cellular component
sequence-specific DNA binding Blast molecular function
transcription regulatory region DNA binding Blast molecular function
oxidation-reduction process Blast biological process
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
G-protein coupled receptor activity Blast molecular function
catalytic activity Blast molecular function
centrosome Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 108 7.09e-27
RNA polymerase II core promoter sequence-specific DNA binding Hs molecular function 108 1.93e-26
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 108 7.09e-27
core promoter proximal region sequence-specific DNA binding Hs molecular function 108 1.36e-26
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 108 7.09e-27
fibrillar center Hs cellular component 108 7.09e-27
DNA binding Hs molecular function 108 7.09e-27
transcription factor activity, sequence-specific DNA binding Hs molecular function 108 7.09e-27
thyroid-stimulating hormone receptor activity Hs molecular function 108 1.93e-26
protein binding Hs molecular function 108 7.09e-27
nucleus Hs cellular component 108 7.09e-27
nucleoplasm Hs cellular component 108 7.09e-27
nucleolus Hs cellular component 108 1.36e-26
lysosome Hs cellular component 108 1.36e-26
Golgi apparatus Hs cellular component 108 1.36e-26
microtubule organizing center Hs cellular component 108 1.36e-26
cytosol Hs cellular component 108 7.09e-27
transcription factor binding Hs molecular function 108 1.36e-26
superoxide-generating NADPH oxidase activity Hs molecular function 108 1.36e-26
macromolecular complex Hs cellular component 108 1.36e-26
protein-DNA complex Hs cellular component 108 1.36e-26
centriolar satellite Hs cellular component 108 1.36e-26
intracellular membrane-bounded organelle Hs cellular component 108 7.09e-27
sequence-specific DNA binding Hs molecular function 108 1.93e-26
transcription regulatory region DNA binding Hs molecular function 108 1.36e-26

GO (InterProScan)

2 results

GO Term Analysis Type e-value
DNA binding Pfam molecular function 1.3E-26
regulation of transcription, DNA-templated Pfam biological process 1.3E-26

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