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  1. Gene 'Phmamm.CG.MTP2014.S2...'

Gene Card

Best human hits

AC018523.2; PSMA1; PSMA5

Species

P.mammillata

Unique Gene ID

Phmamm.g00005429

Gene Model ID

Phmamm.CG.MTP2014.S210.g05429

Location

S210:107189..108780

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S210.g05429.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

28 results

AHC0AAA22YI12

Plate: Plate_22_I12

AHC0AAA6YM20

Plate: Plate_6_M20

AHC0AAA32YE05

Plate: Plate_32_E05

AHC0AAA34YO07

Plate: Plate_34_O07

AHC0AAA41YD18

Plate: Plate_41_D18

AHC0AAA47YF14

Plate: Plate_47_F14

AHC0AAA57YH05

Plate: Plate_57_H05

AHC0AAA59YD08

Plate: Plate_59_D08

AHC0AAA60YN01

Plate: Plate_60_N01

AHC0AAA63YF09

Plate: Plate_63_F09

AHC0AAA102YC16

Plate: Plate_102_C16

AHC0AAA105YO06

Plate: Plate_105_O06

AHC0AAA109YO13

Plate: Plate_109_O13

AHC0AAA114YC19

Plate: Plate_114_C19

AHC0AAA88YI19

Plate: Plate_88_I19

AHC0AAA95YO17

Plate: Plate_95_O17

AHC0AAA179YM10

Plate: Plate_179_M10

AHC0AAA203YA18

Plate: Plate_203_A18

AHC0AAA204YJ12

Plate: Plate_204_J12

AHC0AAA218YE14

Plate: Plate_218_E14

AHC0AAA222YL12

Plate: Plate_222_L12

AHC0AAA224YE07

Plate: Plate_224_E07

AHC0AAA228YO05

Plate: Plate_228_O05

AHC0AAA230YJ19

Plate: Plate_230_J19

AHC0AAA232YP18

Plate: Plate_232_P18

AHC0AAA235YB17

Plate: Plate_235_B17

AHC0AAA240YL02

Plate: Plate_240_L02

AHC0AAA259YC16

Plate: Plate_259_C16

WashU Genome Browser

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Genomicus Synteny Browser

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Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Proteasome_alpha1 PANTHER Proteasome subunit alpha 1
Proteasome_sua/b Pfam Proteasome, subunit alpha/beta
Proteasome_asu_N SMART Proteasome alpha-subunit, N-terminal domain
Ntn_hydrolases_N SUPERFAMILY Nucleophile aminohydrolases, N-terminal
Proteasome_asu_N ProSitePatterns Proteasome alpha-subunit, N-terminal domain
Proteasome_asu_N Pfam Proteasome alpha-subunit, N-terminal domain
Ntn_hydrolases_N Gene3D Nucleophile aminohydrolases, N-terminal

GOSlim

21 results

GO Term Annotation Origin Type
RNA binding Blast molecular function
endopeptidase activity Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
centrosome Blast cellular component
cytosol Blast cellular component
proteolysis InterProScan biological process
peptidase activity Blast molecular function
membrane Blast cellular component
integral component of membrane Blast cellular component
hydrolase activity Blast molecular function
extracellular exosome Blast cellular component
intracellular part Blast cellular component
macromolecular complex Blast cellular component
intracellular organelle part Blast cellular component
cytoplasmic vesicle Blast cellular component
endomembrane system Blast cellular component
intracellular organelle lumen Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
proteasome complex Hs cellular component 189 9.41e-62
RNA binding Hs molecular function 184 4.78e-58
endopeptidase activity Hs molecular function 189 9.41e-62
threonine-type endopeptidase activity Hs molecular function 189 9.41e-62
protein binding Hs molecular function 184 4.78e-58
extracellular region Hs cellular component 79.0 7.23e-18
nucleus Hs cellular component 189 9.41e-62
nucleoplasm Hs cellular component 184 4.78e-58
cytoplasm Hs cellular component 189 9.41e-62
centrosome Hs cellular component 184 4.78e-58
cytosol Hs cellular component 184 4.78e-58
proteasome core complex Hs cellular component 189 9.41e-62
polysome Hs cellular component 184 4.78e-58
peptidase activity Hs molecular function 189 9.41e-62
membrane Hs cellular component 189 9.41e-62
integral component of membrane Hs cellular component 189 9.41e-62
hydrolase activity Hs molecular function 189 9.41e-62
proteasome core complex, alpha-subunit complex Hs cellular component 189 9.41e-62
secretory granule lumen Hs cellular component 79.0 7.23e-18
extracellular exosome Hs cellular component 184 4.78e-58
ficolin-1-rich granule lumen Hs cellular component 79.0 7.23e-18

GO (InterProScan)

6 results

GO Term Analysis Type e-value
endopeptidase activity Pfam molecular function 2.9E-13
threonine-type endopeptidase activity Pfam molecular function 1.0E-17
proteasome core complex Pfam cellular component 1.0E-17
ubiquitin-dependent protein catabolic process Pfam biological process 2.9E-13
proteasome core complex, alpha-subunit complex PANTHER cellular component 8.8E-70
proteolysis involved in cellular protein catabolic process Pfam biological process 1.0E-17