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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S2...'

Gene Card

Best human hits

TCEA1; TCEA2; TCEA3

Species

P.mammillata

Unique Gene ID

Phmamm.g00016295

Gene Model ID

Phmamm.CG.MTP2014.S2160.g16295

Location

S2160:14516..18237

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

23 results

AHC0AAA19YH02

Plate: Plate_19_H02

AHC0AAA7YM14

Plate: Plate_7_M14

AHC0AAA42YA18

Plate: Plate_42_A18

AHC0AAA61YO21

Plate: Plate_61_O21

AHC0AAA66YC23

Plate: Plate_66_C23

AHC0AAA72YE22

Plate: Plate_72_E22

AHC0AAA72YK13

Plate: Plate_72_K13

AHC0AAA124YG13

Plate: Plate_124_G13

AHC0AAA148YG19

Plate: Plate_148_G19

AHC0AAA149YL01

Plate: Plate_149_L01

AHC0AAA153YF04

Plate: Plate_153_F04

AHC0AAA86YC12

Plate: Plate_86_C12

AHC0AAA179YB24

Plate: Plate_179_B24

AHC0AAA179YJ01

Plate: Plate_179_J01

AHC0AAA193YF10

Plate: Plate_193_F10

AHC0AAA195YN12

Plate: Plate_195_N12

AHC0AAA208YG15

Plate: Plate_208_G15

AHC0AAA209YL23

Plate: Plate_209_L23

AHC0AAA212YO14

Plate: Plate_212_O14

AHC0AAA226YO18

Plate: Plate_226_O18

AHC0AAA231YB22

Plate: Plate_231_B22

AHC0AAA254YJ16

Plate: Plate_254_J16

AHC0AAA258YP07

Plate: Plate_258_P07

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term Analysis Definition
TFIIS_cen_dom Pfam Transcription elongation factor S-II, central domain
TFIIS/LEDGF_dom_sf Gene3D TFIIS/LEDGF domain superfamily
TFIIS_cen_dom_sf SUPERFAMILY Transcription elongation factor S-II, central domain superfamily
Znf_TFIIS ProSiteProfiles Zinc finger, TFIIS-type
TFSII TIGRFAM Transcription elongation factor, TFIIS
Znf_TFIIS SMART Zinc finger, TFIIS-type
TF_IIS-typ PIRSF Transcription elongation factor, IIS-type
TFIIS_N Pfam Transcription factor IIS, N-terminal
TFIIS_cen_dom ProSiteProfiles Transcription elongation factor S-II, central domain
TFIIS_N ProSiteProfiles Transcription factor IIS, N-terminal
TFIIS/LEDGF_dom_sf SUPERFAMILY TFIIS/LEDGF domain superfamily
TFIIS_cen_dom SMART Transcription elongation factor S-II, central domain
TFIIS_cen_dom_sf Gene3D Transcription elongation factor S-II, central domain superfamily
TFIIS/CRSP70_N_sub SMART Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type

GOSlim

17 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
zinc ion binding Orthology molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metal ion binding Orthology molecular function
RNA binding Orthology molecular function
regulation of gene expression Orthology biological process
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
DNA repair Orthology biological process

GO (Orthology)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
translation elongation factor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor TFIID complex Hs cellular component
nucleolus Hs cellular component
transcription-coupled nucleotide-excision repair Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription elongation from RNA polymerase II promoter Hs biological process
translational elongation Hs biological process
transcription elongation factor complex Hs cellular component
zinc ion binding Hs molecular function
regulation of DNA-templated transcription, elongation Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function

GO (Blast)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleic acid binding Hs molecular function 212 4.49e-67
DNA binding Hs molecular function 212 4.49e-67
translation elongation factor activity Hs molecular function 212 4.49e-67
protein binding Hs molecular function 212 4.49e-67
nucleus Hs cellular component 212 4.49e-67
nucleoplasm Hs cellular component 198 7.78e-62
transcription factor TFIID complex Hs cellular component 198 7.78e-62
nucleolus Hs cellular component 198 7.78e-62
transcription elongation factor complex Hs cellular component 212 4.49e-67
zinc ion binding Hs molecular function 212 4.49e-67
metal ion binding Hs molecular function 212 4.49e-67

GO (InterProScan)

5 results

GO Term Analysis Type e-value
nucleic acid binding TIGRFAM molecular function 2.0E-77
nucleus TIGRFAM cellular component 2.0E-77
transcription, DNA-templated TIGRFAM biological process 2.0E-77
regulation of transcription, DNA-templated TIGRFAM biological process 2.0E-77
zinc ion binding SMART molecular function 1.8E-4