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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S2...'

Gene Card

Best human hits

CSDE1

Species

P.mammillata

Unique Gene ID

Phmamm.g00005569

Gene Model ID

Phmamm.CG.MTP2014.S218.g05569

Location

S218:108066..128245

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

14 results

AHC0AAA30YN06

Plate: Plate_30_N06

AHC0AAA43YD19

Plate: Plate_43_D19

AHC0AAA111YJ22

Plate: Plate_111_J22

AHC0AAA117YE02

Plate: Plate_117_E02

AHC0AAA126YG10

Plate: Plate_126_G10

AHC0AAA132YI01

Plate: Plate_132_I01

AHC0AAA149YF24

Plate: Plate_149_F24

AHC0AAA150YL06

Plate: Plate_150_L06

AHC0AAA86YF01

Plate: Plate_86_F01

AHC0AAA90YD21

Plate: Plate_90_D21

AHC0AAA165YI09

Plate: Plate_165_I09

AHC0AAA178YA05

Plate: Plate_178_A05

AHC0AAA204YI17

Plate: Plate_204_I17

AHC0AAA254YP11

Plate: Plate_254_P11

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Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Cold-shock_CS ProSitePatterns Cold-shock conserved site
NA-bd_OB-fold SUPERFAMILY Nucleic acid-binding, OB-fold
CSD SMART Cold shock domain
CSP_DNA-bd CDD Cold-shock protein, DNA-binding
CSP_DNA-bd Pfam Cold-shock protein, DNA-binding

GOSlim

15 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
cytoplasm Orthology cellular component
mitochondrial inner membrane Orthology cellular component
Golgi apparatus Orthology cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
regulation of transcription, DNA-templated Orthology biological process
reproductive process Orthology biological process
animal organ development Orthology biological process
cytoplasmic part Orthology cellular component
macromolecular complex Orthology cellular component
nuclear-transcribed mRNA catabolic process Orthology biological process

GO (Orthology)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
cytoplasm Hs cellular component
mitochondrial inner membrane Hs cellular component
Golgi apparatus Hs cellular component
cytosol Hs cellular component
plasma membrane Hs cellular component
regulation of transcription, DNA-templated Hs biological process
male gonad development Hs biological process
CRD-mediated mRNA stability complex Hs cellular component
nuclear-transcribed mRNA catabolic process, no-go decay Hs biological process

GO (Blast)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleic acid binding Hs molecular function 366 7.20e-111
DNA binding Hs molecular function 366 7.20e-111
RNA binding Hs molecular function 366 7.20e-111
protein binding Hs molecular function 366 7.20e-111
cytoplasm Hs cellular component 366 7.20e-111
mitochondrial inner membrane Hs cellular component 366 7.20e-111
Golgi apparatus Hs cellular component 366 7.20e-111
cytosol Hs cellular component 366 7.20e-111
plasma membrane Hs cellular component 366 7.20e-111
CRD-mediated mRNA stability complex Hs cellular component 366 7.20e-111

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 1.9E-15
DNA binding Pfam molecular function 1.9E-15
regulation of transcription, DNA-templated Pfam biological process 1.9E-15