Aniseed - Gene card

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

7 results

AHC0AAA245YC23

Plate: Plate_245_C23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Znf_C2H2_type	Pfam	Zinc finger C2H2-type
Znf_C2H2_type	ProSiteProfiles	Zinc finger C2H2-type
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
Znf_C2H2_type	SMART	Zinc finger C2H2-type
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily

GOSlim

46 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
core promoter proximal region sequence-specific DNA binding	Blast	molecular function
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
double-stranded DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Blast	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
transcription factor binding	Orthology	molecular function
zinc ion binding	Blast	molecular function
cell differentiation	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
transcription regulatory region DNA binding	Blast	molecular function
positive regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
metal ion binding	Orthology	molecular function
angiogenesis	Orthology	biological process
Golgi apparatus	Orthology	cellular component
positive regulation of cell proliferation	Orthology	biological process
intracellular membrane-bounded organelle	Orthology	cellular component
cellular response to organic substance	Orthology	biological process
cell projection assembly	Orthology	biological process
animal organ development	Orthology	biological process
cell development	Orthology	biological process
system development	Orthology	biological process
intracellular organelle part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component
nuclear lumen	Blast	cellular component
intracellular part	Blast	cellular component
macromolecular complex	Blast	cellular component
kinase binding	Blast	molecular function
organic substance metabolic process	Blast	biological process
kinase activity	Blast	molecular function
regulation of cellular metabolic process	Blast	biological process
enzyme regulator activity	Blast	molecular function
enzyme binding	Blast	molecular function
nuclear part	Blast	cellular component
chromatin binding	Blast	molecular function

GO (Orthology)

29 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
transcription factor binding	Hs	molecular function
sequence-specific DNA binding	Hs	molecular function
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
metal ion binding	Hs	molecular function
cellular response to organic cyclic compound	Hs	biological process
angiogenesis	Hs	biological process
Golgi apparatus	Hs	cellular component
positive regulation of cell proliferation	Hs	biological process
microvillus assembly	Hs	biological process
regulation of microvillus assembly	Hs	biological process
skeletal muscle cell differentiation	Hs	biological process
intracellular membrane-bounded organelle	Hs	cellular component
positive regulation of fat cell differentiation	Hs	biological process
intestinal epithelial cell development	Hs	biological process

GO (Blast)

30 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
chromatin	Hs	cellular component	81.3	3.34e-18
nuclear chromatin	Hs	cellular component	81.3	3.34e-18
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	81.3	3.34e-18
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	81.3	3.34e-18
core promoter proximal region sequence-specific DNA binding	Hs	molecular function	81.3	3.34e-18
transcription factor activity, sequence-specific DNA binding transcription factor recruiting	Hs	molecular function	81.3	3.34e-18
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	81.3	3.34e-18
RNA polymerase II transcription factor binding	Hs	molecular function	81.3	3.34e-18
transcriptional activator activity, RNA polymerase II transcription factor binding	Hs	molecular function	81.3	3.34e-18
transcription cofactor binding	Hs	molecular function	81.3	3.34e-18
nucleic acid binding	Hs	molecular function	81.3	3.34e-18
DNA binding	Hs	molecular function	81.3	3.34e-18
double-stranded DNA binding	Hs	molecular function	81.3	3.34e-18
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	81.3	3.34e-18
protein binding	Hs	molecular function	81.3	3.34e-18
nucleus	Hs	cellular component	81.3	3.34e-18
nucleoplasm	Hs	cellular component	81.3	3.34e-18
transcription factor complex	Hs	cellular component	81.3	3.34e-18
nuclear euchromatin	Hs	cellular component	81.3	3.34e-18
cytoplasm	Hs	cellular component	81.3	3.34e-18
beta-catenin binding	Hs	molecular function	81.3	3.34e-18
transcription factor binding	Hs	molecular function	81.3	3.34e-18
zinc ion binding	Hs	molecular function	81.3	3.34e-18
phosphatidylinositol 3-kinase regulator activity	Hs	molecular function	81.3	3.34e-18
histone deacetylase binding	Hs	molecular function	81.3	3.34e-18
sequence-specific DNA binding	Hs	molecular function	81.3	3.34e-18
transcription regulatory region DNA binding	Hs	molecular function	81.3	3.34e-18
nuclear transcription factor complex	Hs	cellular component	81.3	3.34e-18
metal ion binding	Hs	molecular function	81.3	3.34e-18
promoter-specific chromatin binding	Hs	molecular function	81.3	3.34e-18

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	1.5E-5

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences

External database links

Genoscope Yasuo Villefranche

AHC0AAA134YA07

AHC0AAA96YA08

AHC0AAA164YF23

AHC0AAA164YI18

AHC0AAA185YB15