Aniseed - Gene card

Gene Card

Best human hits

FTSJ1; FTSJ3; MRM2

Species

P.mammillata

Unique Gene ID

Phmamm.g00006399

Gene Model ID

Phmamm.CG.MTP2014.S267.g06399

Location

S267:128045..140810

Transcript Models and Sequences

Phmamm.CG.MTP2014.S267.g06399.01.t
Phmamm.CG.MTP2014.S267.g06399.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

2 results

AHC0AAA79YO22

Plate: Plate_79_O22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
rRNA-MeTfrase_E	PIRSF	Ribosomal RNA large subunit methyltransferase E
SAM-dependent_MTases	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferase
rRNA_MeTrfase_FtsJ_dom	Pfam	Ribosomal RNA methyltransferase FtsJ domain

GOSlim

14 results

GO Term	Annotation Origin	Type
RNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Blast	cellular component
mitochondrion	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
cytosol	Blast	cellular component
cell proliferation	Orthology	biological process
transferase activity	Orthology	molecular function
RNA metabolic process	Orthology	biological process
RNA processing	Orthology	biological process
metabolic process	Orthology	biological process
macromolecular complex	Blast	cellular component

GO (Orthology)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA methylation	Hs	biological process
nucleolus	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial matrix	Hs	cellular component
rRNA processing	Hs	biological process
methyltransferase activity	Hs	molecular function
cell proliferation	Hs	biological process
rRNA (uridine-2'-O-)-methyltransferase activity	Hs	molecular function
transferase activity	Hs	molecular function
rRNA methylation	Hs	biological process
methylation	Hs	biological process

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	69.3	1.35e-13
protein binding	Hs	molecular function	69.3	1.35e-13
nucleus	Hs	cellular component	69.3	1.35e-13
nucleolus	Hs	cellular component	130	3.86e-37
cytoplasm	Hs	cellular component	107	1.22e-27
mitochondrion	Hs	cellular component	130	3.86e-37
mitochondrial matrix	Hs	cellular component	130	3.86e-37
cytosol	Hs	cellular component	107	1.22e-27
methyltransferase activity	Hs	molecular function	130	3.86e-37
tRNA methyltransferase activity	Hs	molecular function	107	1.22e-27
rRNA methyltransferase activity	Hs	molecular function	69.3	1.35e-13
rRNA (uridine-2'-O-)-methyltransferase activity	Hs	molecular function	130	3.86e-37
tRNA (guanosine-2'-O-)-methyltransferase activity	Hs	molecular function	107	1.22e-27
rRNA (guanine) methyltransferase activity	Hs	molecular function	69.3	1.35e-13
transferase activity	Hs	molecular function	130	3.86e-37
preribosome, large subunit precursor	Hs	cellular component	69.3	1.35e-13
tRNA (cytosine-2'-O-)-methyltransferase activity	Hs	molecular function	107	1.22e-27

GO (InterProScan)