Aniseed - Gene card

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

4 results

AHC0AAA234YF23

Plate: Plate_234_F23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Trp-tRNA-ligase	TIGRFAM	Tryptophan-tRNA ligase
Trp-tRNA-ligase	CDD	Tryptophan-tRNA ligase
aa-tRNA-synth_Ic	Pfam	Aminoacyl-tRNA synthetase, class Ic
Trp-tRNA-ligase	PRINTS	Tryptophan-tRNA ligase
Rossmann-like_a/b/a_fold	Gene3D	Rossmann-like alpha/beta/alpha sandwich fold
aa-tRNA-synth_I_CS	ProSitePatterns	Aminoacyl-tRNA synthetase, class I, conserved site

GOSlim

23 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
angiogenesis	Orthology	biological process
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Blast	cellular component
mitochondrial matrix	Blast	cellular component
cytosol	Orthology	cellular component
plasma membrane	Blast	cellular component
negative regulation of cell proliferation	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
ligase activity	Orthology	molecular function
protein kinase binding	Orthology	molecular function
macromolecular complex	Orthology	cellular component
protein homodimerization activity	Orthology	molecular function
extracellular exosome	Orthology	cellular component
protein phosphorylation	Orthology	biological process
RNA metabolic process	Orthology	biological process
regulation of catalytic activity	Orthology	biological process
protein kinase activity	Orthology	molecular function
kinase activity	Orthology	molecular function
enzyme regulator activity	Orthology	molecular function

GO (Orthology)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
angiogenesis	Hs	biological process
negative regulation of protein phosphorylation	Hs	biological process
aminoacyl-tRNA ligase activity	Hs	molecular function
tryptophan-tRNA ligase activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
translation	Hs	biological process
tRNA aminoacylation for protein translation	Hs	biological process
tryptophanyl-tRNA aminoacylation	Hs	biological process
negative regulation of protein kinase activity	Hs	biological process
negative regulation of cell proliferation	Hs	biological process
positive regulation of gene expression	Hs	biological process
ligase activity	Hs	molecular function
kinase inhibitor activity	Hs	molecular function
protein kinase binding	Hs	molecular function
protein domain specific binding	Hs	molecular function
positive regulation of protein complex assembly	Hs	biological process
macromolecular complex	Hs	cellular component
protein homodimerization activity	Hs	molecular function
regulation of angiogenesis	Hs	biological process
extracellular exosome	Hs	cellular component

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	590	0.0
aminoacyl-tRNA ligase activity	Hs	molecular function	590	0.0
tryptophan-tRNA ligase activity	Hs	molecular function	590	0.0
protein binding	Hs	molecular function	590	0.0
ATP binding	Hs	molecular function	590	0.0
nucleus	Hs	cellular component	590	0.0
cytoplasm	Hs	cellular component	590	0.0
mitochondrion	Hs	cellular component	45.4	4.15e-05
mitochondrial matrix	Hs	cellular component	45.4	4.15e-05
cytosol	Hs	cellular component	590	0.0
plasma membrane	Hs	cellular component	45.4	4.15e-05
ligase activity	Hs	molecular function	590	0.0
kinase inhibitor activity	Hs	molecular function	590	0.0
protein kinase binding	Hs	molecular function	590	0.0
protein domain specific binding	Hs	molecular function	590	0.0
macromolecular complex	Hs	cellular component	590	0.0
protein homodimerization activity	Hs	molecular function	590	0.0
extracellular exosome	Hs	cellular component	590	0.0

GO (InterProScan)

7 results

GO Term	Analysis	Type	e-value
nucleotide binding	CDD	molecular function	4.37599E-112
aminoacyl-tRNA ligase activity	Pfam	molecular function	6.1E-24
tryptophan-tRNA ligase activity	CDD	molecular function	4.37599E-112
ATP binding	CDD	molecular function	4.37599E-112
cytoplasm	CDD	cellular component	4.37599E-112
tRNA aminoacylation for protein translation	Pfam	biological process	6.1E-24
tryptophanyl-tRNA aminoacylation	CDD	biological process	4.37599E-112

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences