Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

SRBD1; SUPT6H; TMPRSS13

Species

P.mammillata

Unique Gene ID

Phmamm.g00007151

Gene Model ID

Phmamm.CG.MTP2014.S316.g07151

Location

S316:120461..150736

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S316.g07151.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

26 results

AHC0AAA15YB02

Plate: Plate_15_B02

AHC0AAA3YN06

Plate: Plate_3_N06

AHC0AAA33YA15

Plate: Plate_33_A15

AHC0AAA36YN11

Plate: Plate_36_N11

AHC0AAA66YM11

Plate: Plate_66_M11

AHC0AAA70YH24

Plate: Plate_70_H24

AHC0AAA73YH16

Plate: Plate_73_H16

AHC0AAA102YD22

Plate: Plate_102_D22

AHC0AAA107YM19

Plate: Plate_107_M19

AHC0AAA111YA18

Plate: Plate_111_A18

AHC0AAA114YC11

Plate: Plate_114_C11

AHC0AAA134YI14

Plate: Plate_134_I14

AHC0AAA146YF15

Plate: Plate_146_F15

AHC0AAA155YG21

Plate: Plate_155_G21

AHC0AAA91YG18

Plate: Plate_91_G18

AHC0AAA99YC20

Plate: Plate_99_C20

AHC0AAA159YJ13

Plate: Plate_159_J13

AHC0AAA185YN20

Plate: Plate_185_N20

AHC0AAA226YM17

Plate: Plate_226_M17

AHC0AAA227YH15

Plate: Plate_227_H15

AHC0AAA233YM22

Plate: Plate_233_M22

AHC0AAA240YB24

Plate: Plate_240_B24

AHC0AAA244YJ01

Plate: Plate_244_J01

AHC0AAA249YK17

Plate: Plate_249_K17

AHC0AAA255YP21

Plate: Plate_255_P21

AHC0AAA267YA01

Plate: Plate_267_A01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

20 results

IPR Term Analysis Definition
Spt6_acidic_N_dom Pfam Spt6 acidic, N-terminal domain
TF_Spt6 PIRSF Transcription elongation factor Spt6
Spt6_SH2 Pfam Spt6, SH2 domain
Spt6_YqgF Pfam Transcription elongation factor Spt6, YqgF domain
Tex-like_dom_sf Gene3D Tex-like domain superfamily
Spt6_HTH_DNA-bd_dom Pfam Helix-turn-helix DNA-binding domain of Spt6
Tex-like_HTH_dom_sf Gene3D Tex-like protein, HTH domain superfamily
Spt6_HHH Pfam Transcription elongation factor Spt6, helix-hairpin-helix motif
S1_dom SMART RNA-binding domain, S1
S1_domain Pfam S1 domain
RNaseH-like_sf SUPERFAMILY Ribonuclease H-like superfamily
TF_Spt6 PANTHER Transcription elongation factor Spt6
S1_domain ProSiteProfiles S1 domain
Spt6_SH2_N CDD Spt6, SH2 domain, N terminus
YqgF/RNaseH-like_dom_sf Gene3D YqgF/RNase H-like domain superfamily
SH2_dom_sf Gene3D SH2 domain superfamily
YqgF/RNaseH-like_dom SMART YqgF/RNase H-like domain
RuvA_2-like SUPERFAMILY RuvA domain 2-like
NA-bd_OB-fold SUPERFAMILY Nucleic acid-binding, OB-fold
Spt6_SH2_C CDD Spt6, SH2 domain, C terminus

GOSlim

36 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
RNA binding Orthology molecular function
serine-type endopeptidase activity Blast molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleobase-containing compound metabolic process Orthology biological process
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
mRNA processing Orthology biological process
peptidase activity Blast molecular function
serine-type peptidase activity Blast molecular function
RNA splicing Orthology biological process
membrane Blast cellular component
integral component of membrane Blast cellular component
hydrolase activity Blast molecular function
organelle organization Orthology biological process
negative regulation of transcription, DNA-templated Orthology biological process
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
intracellular protein transport Orthology biological process
regulation of gene expression Orthology biological process
chromatin binding Orthology molecular function
macromolecular complex binding Orthology molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
intracellular organelle part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
mRNA metabolic process Orthology biological process
organic substance transport Orthology biological process
cellular protein modification process Orthology biological process
membrane organization Blast biological process
extracellular space Blast cellular component

GO (Orthology)

32 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
transcription factor activity, core RNA polymerase II binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleobase-containing compound metabolic process Hs biological process
chromatin remodeling Hs biological process
chromatin silencing Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription elongation from RNA polymerase II promoter Hs biological process
mRNA processing Hs biological process
transcription elongation factor complex Hs cellular component
RNA splicing Hs biological process
regulation of mRNA export from nucleus Hs biological process
viral process Hs biological process
nucleosome binding Hs molecular function
regulation of DNA-templated transcription, elongation Hs biological process
positive regulation of transcription elongation from RNA polymerase II promoter Hs biological process
nucleosome organization Hs biological process
transcriptionally active chromatin Hs cellular component
histone binding Hs molecular function
mRNA transcription from RNA polymerase II promoter Hs biological process
regulation of mRNA processing Hs biological process
mRNA transport Hs biological process
negative regulation of histone H3-K27 methylation Hs biological process
chromatin maintenance Hs biological process

GO (Blast)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
transcription factor activity, core RNA polymerase II binding Hs molecular function 1479 0.0
nucleic acid binding Hs molecular function 1479 0.0
DNA binding Hs molecular function 1479 0.0
transcription factor activity, sequence-specific DNA binding Hs molecular function 1479 0.0
RNA binding Hs molecular function 1479 0.0
serine-type endopeptidase activity Hs molecular function 55.8 2.07e-07
scavenger receptor activity Hs molecular function 55.8 2.07e-07
protein binding Hs molecular function 1479 0.0
nucleus Hs cellular component 1479 0.0
nucleoplasm Hs cellular component 1479 0.0
transcription elongation factor complex Hs cellular component 1479 0.0
peptidase activity Hs molecular function 55.8 2.07e-07
serine-type peptidase activity Hs molecular function 55.8 2.07e-07
membrane Hs cellular component 55.8 2.07e-07
integral component of membrane Hs cellular component 55.8 2.07e-07
hydrolase activity Hs molecular function 55.8 2.07e-07
nucleosome binding Hs molecular function 1479 0.0
transcriptionally active chromatin Hs cellular component 1479 0.0
histone binding Hs molecular function 1479 0.0
blood microparticle Hs cellular component 55.8 2.07e-07

GO (InterProScan)

7 results

GO Term Analysis Type e-value
transcription factor activity, core RNA polymerase II binding PANTHER molecular function 0.0
nucleic acid binding Pfam molecular function 3.1E-8
DNA binding Pfam molecular function 1.2E-21
nucleobase-containing compound metabolic process Gene3D biological process 2.7E-11
regulation of transcription from RNA polymerase II promoter PANTHER biological process 0.0
regulation of DNA-templated transcription, elongation PANTHER biological process 0.0
positive regulation of transcription elongation from RNA polymerase II promoter PANTHER biological process 0.0