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GENE CARD

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  1. Gene 'Harore.CG.MTP2014.S6...'

Gene Card

Best human hits

COL12A1; SELE; SELP

Species

P.mammillata

Unique Gene ID

Phmamm.g00001263

Gene Model ID

Phmamm.CG.MTP2014.S32.g01263

Location

S32:226200..241406

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S32.g01263.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

22 results

IPR Term Analysis Definition
Sushi_SCR_CCP_dom CDD Sushi/SCR/CCP domain
EGF-type_Asp/Asn_hydroxyl_site ProSitePatterns EGF-type aspartate/asparagine hydroxylation site
Sushi_SCR_CCP_dom ProSiteProfiles Sushi/SCR/CCP domain
FN3_dom CDD Fibronectin type III
Sushi_SCR_CCP_dom Pfam Sushi/SCR/CCP domain
VWF_A Pfam von Willebrand factor, type A
FN3_dom ProSiteProfiles Fibronectin type III
VWF_A ProSiteProfiles von Willebrand factor, type A
EGF_Ca-bd_CS ProSitePatterns EGF-like calcium-binding, conserved site
Sushi/SCR/CCP_sf SUPERFAMILY Sushi/SCR/CCP superfamily
Ig-like_fold Gene3D Immunoglobulin-like fold
EGF-like_dom Pfam EGF-like domain
EGF-like_Ca-bd_dom SMART EGF-like calcium-binding domain
FN3_sf SUPERFAMILY Fibronectin type III superfamily
vWFA_dom_sf SUPERFAMILY von Willebrand factor A-like domain superfamily
VWF_A SMART von Willebrand factor, type A
EGF-like_CS ProSitePatterns EGF-like, conserved site
EGF-like_dom SMART EGF-like domain
vWFA_dom_sf Gene3D von Willebrand factor A-like domain superfamily
EGF-like_dom ProSiteProfiles EGF-like domain
FN3_dom SMART Fibronectin type III
Sushi_SCR_CCP_dom SMART Sushi/SCR/CCP domain

GOSlim

35 results

GO Term Annotation Origin Type
transmembrane signaling receptor activity Blast molecular function
calcium ion binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
endoplasmic reticulum lumen Blast cellular component
plasma membrane Blast cellular component
integral component of plasma membrane Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
membrane raft Blast cellular component
metal ion binding Blast molecular function
perinuclear region of cytoplasm Blast cellular component
extracellular exosome Blast cellular component
extracellular vesicle Blast cellular component
carbohydrate derivative binding Blast molecular function
macromolecular complex Blast cellular component
extracellular region part Blast cellular component
plasma membrane region Blast cellular component
membrane part Blast cellular component
endomembrane system Blast cellular component
anion binding Blast molecular function
plasma membrane part Blast cellular component
cell surface Blast cellular component
structural molecule activity Blast molecular function
binding Blast molecular function
cytoplasmic part Blast cellular component
cell periphery Blast cellular component
cytoskeleton Blast cellular component
whole membrane Blast cellular component
intracellular organelle part Blast cellular component
cytoplasmic vesicle Blast cellular component
bounding membrane of organelle Blast cellular component
small molecule binding Blast molecular function
enzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

35 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
lipopolysaccharide binding Hs molecular function 114 1.12e-25
transmembrane signaling receptor activity Hs molecular function 107 1.04e-23
calcium ion binding Hs molecular function 114 1.12e-25
protein binding Hs molecular function 114 1.12e-25
extracellular region Hs cellular component 111 1.34e-24
proteinaceous extracellular matrix Hs cellular component 111 1.34e-24
collagen trimer Hs cellular component 111 1.34e-24
collagen type XII trimer Hs cellular component 111 1.34e-24
extracellular space Hs cellular component 114 1.12e-25
endoplasmic reticulum lumen Hs cellular component 111 1.34e-24
plasma membrane Hs cellular component 114 1.12e-25
integral component of plasma membrane Hs cellular component 114 1.12e-25
caveola Hs cellular component 107 1.04e-23
clathrin-coated pit Hs cellular component 107 1.04e-23
heparin binding Hs molecular function 114 1.12e-25
external side of plasma membrane Hs cellular component 114 1.12e-25
membrane Hs cellular component 114 1.12e-25
integral component of membrane Hs cellular component 114 1.12e-25
extracellular matrix structural constituent conferring tensile strength Hs molecular function 111 1.34e-24
carbohydrate binding Hs molecular function 114 1.12e-25
cortical cytoskeleton Hs cellular component 107 1.04e-23
extracellular matrix Hs cellular component 111 1.34e-24
platelet dense granule membrane Hs cellular component 114 1.12e-25
platelet alpha granule membrane Hs cellular component 114 1.12e-25
sialic acid binding Hs molecular function 114 1.12e-25
fucose binding Hs molecular function 114 1.12e-25
glycosphingolipid binding Hs molecular function 114 1.12e-25
phospholipase binding Hs molecular function 107 1.04e-23
membrane raft Hs cellular component 107 1.04e-23
metal ion binding Hs molecular function 114 1.12e-25
calcium-dependent protein binding Hs molecular function 114 1.12e-25
perinuclear region of cytoplasm Hs cellular component 107 1.04e-23
extracellular exosome Hs cellular component 111 1.34e-24
oligosaccharide binding Hs molecular function 114 1.12e-25
extracellular vesicle Hs cellular component 111 1.34e-24

GO (InterProScan)

2 results

GO Term Analysis Type e-value
calcium ion binding SMART molecular function 2.4E-9
protein binding SUPERFAMILY molecular function 3.16E-13