Aniseed - Gene card

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Genoscope Yasuo Villefranche

59 results

AHC0AAA98YC04

Plate: Plate_98_C04

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Genomicus Synteny Browser

Regulatory Regions

No result

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	SMART	RNA recognition motif domain
U2AF_lg	TIGRFAM	U2 snRNP auxilliary factor, large subunit, splicing factor
RRM_dom	Pfam	RNA recognition motif domain
RRM_dom	ProSiteProfiles	RNA recognition motif domain

GOSlim

24 results

GO Term	Annotation Origin	Type
mRNA splicing, via spliceosome	Orthology	biological process
nucleic acid binding	Orthology	molecular function
DNA binding	Blast	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
nuclear speck	Orthology	cellular component
enzyme binding	Orthology	molecular function
cell junction	Blast	cellular component
identical protein binding	Blast	molecular function
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
transcription from RNA polymerase II promoter	Orthology	biological process
organic substance transport	Orthology	biological process
intracellular transport	Orthology	biological process
intracellular protein transport	Orthology	biological process
gene expression	Orthology	biological process
protein ubiquitination	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
cell adhesion molecule binding	Blast	molecular function

GO (Orthology)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
commitment complex	Hs	cellular component
mRNA splicing, via spliceosome	Hs	biological process
Prp19 complex	Hs	cellular component
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
termination of RNA polymerase II transcription	Hs	biological process
mRNA processing	Hs	biological process
RNA export from nucleus	Hs	biological process
mRNA export from nucleus	Hs	biological process
poly-pyrimidine tract binding	Hs	molecular function
RNA splicing	Hs	biological process
nuclear speck	Hs	cellular component
enzyme binding	Hs	molecular function
pre-mRNA 3'-splice site binding	Hs	molecular function
mRNA 3'-end processing	Hs	biological process
negative regulation of protein ubiquitination	Hs	biological process
positive regulation of RNA splicing	Hs	biological process
negative regulation of mRNA splicing, via spliceosome	Hs	biological process
C2H2 zinc finger domain binding	Hs	molecular function
U2-type prespliceosome	Hs	cellular component
U2AF	Hs	cellular component

GO (Blast)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
commitment complex	Hs	cellular component	456	9.08e-159
Prp19 complex	Hs	cellular component	456	9.08e-159
nucleic acid binding	Hs	molecular function	456	9.08e-159
DNA binding	Hs	molecular function	73.2	7.71e-14
RNA binding	Hs	molecular function	456	9.08e-159
protein binding	Hs	molecular function	456	9.08e-159
nucleus	Hs	cellular component	456	9.08e-159
nucleoplasm	Hs	cellular component	456	9.08e-159
spliceosomal complex	Hs	cellular component	456	9.08e-159
poly-pyrimidine tract binding	Hs	molecular function	456	9.08e-159
nuclear speck	Hs	cellular component	456	9.08e-159
enzyme binding	Hs	molecular function	456	9.08e-159
cyclin-dependent protein kinase activating kinase holoenzyme complex	Hs	cellular component	73.2	7.71e-14
cell junction	Hs	cellular component	73.2	7.71e-14
intracellular ribonucleoprotein complex	Hs	cellular component	73.2	7.71e-14
pre-mRNA 3'-splice site binding	Hs	molecular function	456	9.08e-159
identical protein binding	Hs	molecular function	73.2	7.71e-14
cadherin binding	Hs	molecular function	73.2	7.71e-14
C2H2 zinc finger domain binding	Hs	molecular function	456	9.08e-159
U2-type prespliceosome	Hs	cellular component	456	9.08e-159
U2AF	Hs	cellular component	456	9.08e-159

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	2.77E-32
RNA binding	TIGRFAM	molecular function	1.9E-116
nucleus	TIGRFAM	cellular component	1.9E-116
mRNA processing	TIGRFAM	biological process	1.9E-116

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