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GENE CARD

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Gene Card

Best human hits

PUF60; U2AF2

Species

P.mammillata

Unique Gene ID

Phmamm.g00007317

Gene Model ID

Phmamm.CG.MTP2014.S327.g07317

Location

S327:154412..156446

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

59 results

AHC0AAA23YN11

Plate: Plate_23_N11

AHC0AAA26YE20

Plate: Plate_26_E20

AHC0AAA26YK05

Plate: Plate_26_K05

AHC0AAA5YJ21

Plate: Plate_5_J21

AHC0AAA5YN02

Plate: Plate_5_N02

AHC0AAA7YL23

Plate: Plate_7_L23

AHC0AAA8YE11

Plate: Plate_8_E11

AHC0AAA9YM10

Plate: Plate_9_M10

AHC0AAA36YB14

Plate: Plate_36_B14

AHC0AAA40YO01

Plate: Plate_40_O01

AHC0AAA45YJ22

Plate: Plate_45_J22

AHC0AAA57YC16

Plate: Plate_57_C16

AHC0AAA58YB17

Plate: Plate_58_B17

AHC0AAA67YO05

Plate: Plate_67_O05

AHC0AAA80YD04

Plate: Plate_80_D04

AHC0AAA102YH01

Plate: Plate_102_H01

AHC0AAA103YM06

Plate: Plate_103_M06

AHC0AAA110YE21

Plate: Plate_110_E21

AHC0AAA111YJ16

Plate: Plate_111_J16

AHC0AAA114YH01

Plate: Plate_114_H01

AHC0AAA116YI24

Plate: Plate_116_I24

AHC0AAA118YA04

Plate: Plate_118_A04

AHC0AAA124YM13

Plate: Plate_124_M13

AHC0AAA126YG04

Plate: Plate_126_G04

AHC0AAA130YB16

Plate: Plate_130_B16

AHC0AAA135YI22

Plate: Plate_135_I22

AHC0AAA140YK09

Plate: Plate_140_K09

AHC0AAA144YA01

Plate: Plate_144_A01

AHC0AAA146YK21

Plate: Plate_146_K21

AHC0AAA152YD08

Plate: Plate_152_D08

AHC0AAA154YH11

Plate: Plate_154_H11

AHC0AAA81YC18

Plate: Plate_81_C18

AHC0AAA83YF14

Plate: Plate_83_F14

AHC0AAA83YP23

Plate: Plate_83_P23

AHC0AAA91YO08

Plate: Plate_91_O08

AHC0AAA95YF17

Plate: Plate_95_F17

AHC0AAA95YK23

Plate: Plate_95_K23

AHC0AAA98YA02

Plate: Plate_98_A02

AHC0AAA159YN17

Plate: Plate_159_N17

AHC0AAA160YB05

Plate: Plate_160_B05

AHC0AAA161YO24

Plate: Plate_161_O24

AHC0AAA164YM09

Plate: Plate_164_M09

AHC0AAA174YD03

Plate: Plate_174_D03

AHC0AAA198YO04

Plate: Plate_198_O04

AHC0AAA206YB18

Plate: Plate_206_B18

AHC0AAA207YC08

Plate: Plate_207_C08

AHC0AAA212YB02

Plate: Plate_212_B02

AHC0AAA225YB19

Plate: Plate_225_B19

AHC0AAA227YN02

Plate: Plate_227_N02

AHC0AAA232YE21

Plate: Plate_232_E21

AHC0AAA234YI16

Plate: Plate_234_I16

AHC0AAA235YK20

Plate: Plate_235_K20

AHC0AAA244YL12

Plate: Plate_244_L12

AHC0AAA253YE22

Plate: Plate_253_E22

AHC0AAA254YM09

Plate: Plate_254_M09

AHC0AAA267YH24

Plate: Plate_267_H24

AHC0AAA268YG24

Plate: Plate_268_G24

AHC0AAA268YO20

Plate: Plate_268_O20

AHC0AAA98YC04

Plate: Plate_98_C04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom SMART RNA recognition motif domain
U2AF_lg TIGRFAM U2 snRNP auxilliary factor, large subunit, splicing factor
RRM_dom Pfam RNA recognition motif domain
RRM_dom ProSiteProfiles RNA recognition motif domain

GOSlim

24 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
DNA binding Blast molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear speck Orthology cellular component
enzyme binding Orthology molecular function
cell junction Blast cellular component
identical protein binding Blast molecular function
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
transcription from RNA polymerase II promoter Orthology biological process
organic substance transport Orthology biological process
intracellular transport Orthology biological process
intracellular protein transport Orthology biological process
gene expression Orthology biological process
protein ubiquitination Orthology biological process
positive regulation of gene expression Orthology biological process
negative regulation of gene expression Orthology biological process
cell adhesion molecule binding Blast molecular function

GO (Orthology)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
commitment complex Hs cellular component
mRNA splicing, via spliceosome Hs biological process
Prp19 complex Hs cellular component
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
termination of RNA polymerase II transcription Hs biological process
mRNA processing Hs biological process
RNA export from nucleus Hs biological process
mRNA export from nucleus Hs biological process
poly-pyrimidine tract binding Hs molecular function
RNA splicing Hs biological process
nuclear speck Hs cellular component
enzyme binding Hs molecular function
pre-mRNA 3'-splice site binding Hs molecular function
mRNA 3'-end processing Hs biological process
negative regulation of protein ubiquitination Hs biological process
positive regulation of RNA splicing Hs biological process
negative regulation of mRNA splicing, via spliceosome Hs biological process
C2H2 zinc finger domain binding Hs molecular function
U2-type prespliceosome Hs cellular component
U2AF Hs cellular component

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
commitment complex Hs cellular component 456 9.08e-159
Prp19 complex Hs cellular component 456 9.08e-159
nucleic acid binding Hs molecular function 456 9.08e-159
DNA binding Hs molecular function 73.2 7.71e-14
RNA binding Hs molecular function 456 9.08e-159
protein binding Hs molecular function 456 9.08e-159
nucleus Hs cellular component 456 9.08e-159
nucleoplasm Hs cellular component 456 9.08e-159
spliceosomal complex Hs cellular component 456 9.08e-159
poly-pyrimidine tract binding Hs molecular function 456 9.08e-159
nuclear speck Hs cellular component 456 9.08e-159
enzyme binding Hs molecular function 456 9.08e-159
cyclin-dependent protein kinase activating kinase holoenzyme complex Hs cellular component 73.2 7.71e-14
cell junction Hs cellular component 73.2 7.71e-14
intracellular ribonucleoprotein complex Hs cellular component 73.2 7.71e-14
pre-mRNA 3'-splice site binding Hs molecular function 456 9.08e-159
identical protein binding Hs molecular function 73.2 7.71e-14
cadherin binding Hs molecular function 73.2 7.71e-14
C2H2 zinc finger domain binding Hs molecular function 456 9.08e-159
U2-type prespliceosome Hs cellular component 456 9.08e-159
U2AF Hs cellular component 456 9.08e-159

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 2.77E-32
RNA binding TIGRFAM molecular function 1.9E-116
nucleus TIGRFAM cellular component 1.9E-116
mRNA processing TIGRFAM biological process 1.9E-116