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GENE CARD

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Gene Card

Best human hits

MTREX; SKIV2L

Species

P.mammillata

Unique Gene ID

Phmamm.g00007597

Gene Model ID

Phmamm.CG.MTP2014.S345.g07597

Location

S345:127538..137480

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S345.g07597.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

11 results

AHC0AAA6YF01

Plate: Plate_6_F01

AHC0AAA54YK24

Plate: Plate_54_K24

AHC0AAA141YO16

Plate: Plate_141_O16

AHC0AAA98YI10

Plate: Plate_98_I10

AHC0AAA164YE20

Plate: Plate_164_E20

AHC0AAA194YA06

Plate: Plate_194_A06

AHC0AAA242YD17

Plate: Plate_242_D17

AHC0AAA253YG17

Plate: Plate_253_G17

AHC0AAA253YO14

Plate: Plate_253_O14

AHC0AAA54YK22

Plate: Plate_54_K22

AHC0AAA98YK12

Plate: Plate_98_K12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term Analysis Definition
Helicase_C ProSiteProfiles Helicase, C-terminal
Ski2-like PIRSF ATP-dependent RNA helicase Ski2-like
Helicase_C Pfam Helicase, C-terminal
Helicase_C SMART Helicase, C-terminal
Helicase_C CDD Helicase, C-terminal
Ski2_C Pfam ATP-dependent RNA helicase Ski2, C-terminal
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Ski2_C SMART ATP-dependent RNA helicase Ski2, C-terminal
rRNA_proc-arch_dom Pfam rRNA-processing arch domain
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain

GOSlim

21 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
mRNA processing Orthology biological process
RNA catabolic process Orthology biological process
RNA splicing Orthology biological process
hydrolase activity Orthology molecular function
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
RNA processing Orthology biological process
nucleoside-triphosphatase activity Orthology molecular function
nuclear part Orthology cellular component
cytoplasmic part Blast cellular component

GO (Orthology)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleotide binding Hs molecular function
exosome (RNase complex) Hs cellular component
mRNA splicing, via spliceosome Hs biological process
maturation of 5.8S rRNA Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
RNA helicase activity Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
nucleolus Hs cellular component
rRNA processing Hs biological process
mRNA processing Hs biological process
RNA catabolic process Hs biological process
RNA splicing Hs biological process
hydrolase activity Hs molecular function
catalytic step 2 spliceosome Hs cellular component

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 1100 0.0
exosome (RNase complex) Hs cellular component 1100 0.0
nucleic acid binding Hs molecular function 1100 0.0
RNA binding Hs molecular function 1100 0.0
RNA helicase activity Hs molecular function 1100 0.0
ATP-dependent RNA helicase activity Hs molecular function 1100 0.0
helicase activity Hs molecular function 1100 0.0
protein binding Hs molecular function 1100 0.0
ATP binding Hs molecular function 1100 0.0
nucleus Hs cellular component 1100 0.0
nucleoplasm Hs cellular component 1100 0.0
spliceosomal complex Hs cellular component 1100 0.0
nucleolus Hs cellular component 1100 0.0
cytoplasm Hs cellular component 305 3.36e-87
cytosol Hs cellular component 305 3.36e-87
hydrolase activity Hs molecular function 1100 0.0
Ski complex Hs cellular component 305 3.36e-87
catalytic step 2 spliceosome Hs cellular component 1100 0.0

GO (InterProScan)

5 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 1.1E-7
RNA binding PIRSF molecular function 8.0E-226
RNA helicase activity PIRSF molecular function 8.0E-226
ATP binding Pfam molecular function 1.1E-7
RNA catabolic process PIRSF biological process 8.0E-226