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GENE CARD

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Gene Card

Best human hits

SMG5; SMG6; SMG7

Species

P.mammillata

Unique Gene ID

Phmamm.g00007679

Gene Model ID

Phmamm.CG.MTP2014.S353.g07679

Location

S353:10271..21586

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

29 results

AHC0AAA12YM19

Plate: Plate_12_M19

AHC0AAA18YB13

Plate: Plate_18_B13

AHC0AAA7YA13

Plate: Plate_7_A13

AHC0AAA34YP15

Plate: Plate_34_P15

AHC0AAA35YN14

Plate: Plate_35_N14

AHC0AAA38YH13

Plate: Plate_38_H13

AHC0AAA52YO03

Plate: Plate_52_O03

AHC0AAA54YB10

Plate: Plate_54_B10

AHC0AAA61YI19

Plate: Plate_61_I19

AHC0AAA65YH18

Plate: Plate_65_H18

AHC0AAA74YP15

Plate: Plate_74_P15

AHC0AAA114YD02

Plate: Plate_114_D02

AHC0AAA121YD16

Plate: Plate_121_D16

AHC0AAA139YG03

Plate: Plate_139_G03

AHC0AAA145YD14

Plate: Plate_145_D14

AHC0AAA149YC10

Plate: Plate_149_C10

AHC0AAA151YE18

Plate: Plate_151_E18

AHC0AAA88YC11

Plate: Plate_88_C11

AHC0AAA165YN21

Plate: Plate_165_N21

AHC0AAA168YO15

Plate: Plate_168_O15

AHC0AAA190YA15

Plate: Plate_190_A15

AHC0AAA197YK18

Plate: Plate_197_K18

AHC0AAA202YI16

Plate: Plate_202_I16

AHC0AAA218YP10

Plate: Plate_218_P10

AHC0AAA233YP14

Plate: Plate_233_P14

AHC0AAA242YP10

Plate: Plate_242_P10

AHC0AAA248YK04

Plate: Plate_248_K04

AHC0AAA38YJ15

Plate: Plate_38_J15

AHC0AAA54YD12

Plate: Plate_54_D12

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
EST1 Pfam Telomerase activating protein Est1
DNA/RNA-bd_Est1-type Pfam DNA/RNA-binding domain, Est1-type
TPR-like_helical_dom_sf SUPERFAMILY Tetratricopeptide-like helical domain superfamily

GOSlim

29 results

GO Term Annotation Origin Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Orthology biological process
DNA binding Blast molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleolus Blast cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
hydrolase activity Orthology molecular function
ubiquitin protein ligase binding Orthology molecular function
metal ion binding Blast molecular function
RNA metabolic process Orthology biological process
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
intracellular protein transport Orthology biological process
gene expression Orthology biological process
organelle organization Orthology biological process
DNA metabolic process Orthology biological process
transferase activity, transferring phosphorus-containing groups Orthology molecular function
dephosphorylation Orthology biological process
regulation of cellular metabolic process Orthology biological process
sequence-specific DNA binding Orthology molecular function
enzyme binding Orthology molecular function
macromolecular complex binding Orthology molecular function
RNA catabolic process Orthology biological process
regulation of gene expression Orthology biological process
intracellular organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
cytoskeleton Blast cellular component

GO (Orthology)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Hs biological process
ribonuclease activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
telomerase holoenzyme complex Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
mRNA export from nucleus Hs biological process
ubiquitin protein ligase binding Hs molecular function
regulation of telomere maintenance via telomerase Hs biological process
regulation of dephosphorylation Hs biological process
telomeric DNA binding Hs molecular function
histone deacetylase binding Hs molecular function
ribonucleoprotein complex binding Hs molecular function
regulation of RNA stability Hs biological process
protein phosphatase 2A binding Hs molecular function
telomerase RNA binding Hs molecular function
DNA polymerase binding Hs molecular function
RNA phosphodiester bond hydrolysis Hs biological process

GO (Blast)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
telomerase catalytic core complex Hs cellular component 54.7 2.65e-07
chromosome, telomeric region Hs cellular component 54.7 2.65e-07
DNA binding Hs molecular function 54.7 2.65e-07
RNA binding Hs molecular function 54.7 2.65e-07
nuclease activity Hs molecular function 54.7 2.65e-07
endonuclease activity Hs molecular function 54.7 2.65e-07
endoribonuclease activity Hs molecular function 54.7 2.65e-07
ribonuclease activity Hs molecular function 259 2.73e-73
protein binding Hs molecular function 259 2.73e-73
nucleus Hs cellular component 259 2.73e-73
chromosome Hs cellular component 54.7 2.65e-07
telomerase holoenzyme complex Hs cellular component 259 2.73e-73
nucleolus Hs cellular component 54.7 2.65e-07
cytoplasm Hs cellular component 259 2.73e-73
cytosol Hs cellular component 259 2.73e-73
hydrolase activity Hs molecular function 54.7 2.65e-07
ubiquitin protein ligase binding Hs molecular function 259 2.73e-73
exon-exon junction complex Hs cellular component 54.7 2.65e-07
telomeric DNA binding Hs molecular function 259 2.73e-73
histone deacetylase binding Hs molecular function 259 2.73e-73
ribonucleoprotein complex binding Hs molecular function 259 2.73e-73
intermediate filament cytoskeleton Hs cellular component 65.1 1.51e-10
metal ion binding Hs molecular function 54.7 2.65e-07
protein phosphatase 2A binding Hs molecular function 259 2.73e-73
telomerase RNA binding Hs molecular function 259 2.73e-73
DNA polymerase binding Hs molecular function 259 2.73e-73

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 7.96E-46