Aniseed - Gene card

Gene Card

Best human hits

TBX2; TBX4; TBX6

Species

P.mammillata

Unique Gene ID

Phmamm.g00018004

Gene Model ID

Phmamm.CG.MTP2014.S3764.g18004

Location

S3764:8383..10271

Transcript Models and Sequences

Phmamm.CG.MTP2014.S3764.g18004.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

1 result

AHC0AAA14YJ08

Plate: Plate_14_J08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
TF_T-box	Pfam	Transcription factor, T-box
TF_T-box	PANTHER	Transcription factor, T-box
T-box_sf	Gene3D	T-box superfamily
p53-like_TF_DNA-bd	SUPERFAMILY	p53-like transcription factor, DNA-binding
TF_T-box	ProSiteProfiles	Transcription factor, T-box
TF_T-box	PRINTS	Transcription factor, T-box
TF_T-box	CDD	Transcription factor, T-box
TF_T-box	SMART	Transcription factor, T-box

GOSlim

12 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
regulation of transcription, DNA-templated	InterProScan	biological process
sequence-specific DNA binding	Blast	molecular function
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
transcription factor binding	Blast	molecular function
intracellular part	Blast	cellular component
macromolecular complex	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	203	4.02e-58
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	205	5.53e-61
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	205	5.53e-61
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	203	4.02e-58
RNA polymerase II transcription factor binding	Hs	molecular function	205	5.53e-61
RNA polymerase II activating transcription factor binding	Hs	molecular function	205	5.53e-61
transcriptional repressor activity, RNA polymerase II transcription factor binding	Hs	molecular function	205	5.53e-61
DNA binding	Hs	molecular function	205	5.53e-61
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	205	5.53e-61
protein binding	Hs	molecular function	205	5.53e-61
nucleus	Hs	cellular component	205	5.53e-61
transcription factor complex	Hs	cellular component	203	4.02e-58
sequence-specific DNA binding	Hs	molecular function	203	4.02e-58

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
transcription factor activity, sequence-specific DNA binding	PANTHER	molecular function	2.5E-103
nucleus	PANTHER	cellular component	2.5E-103
regulation of transcription, DNA-templated	PANTHER	biological process	2.5E-103