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GENE CARD

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Gene Card

Best human hits

DDX58; DHX58; IFIH1

Species

P.mammillata

Unique Gene ID

Phmamm.g00018028

Gene Model ID

Phmamm.CG.MTP2014.S3795.g18028

Location

S3795:571..7682

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S3795.g18028.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
Helicase_C CDD Helicase, C-terminal
RLR_CTR ProSiteProfiles RIG-I-like receptor, C-terminal regulatory domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_C Pfam Helicase, C-terminal
RLR_CTR Pfam RIG-I-like receptor, C-terminal regulatory domain
RLR_C_sf Gene3D RIG-I-like receptor, C-terminal domain superfamily
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase_C SMART Helicase, C-terminal

GOSlim

24 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
nucleic acid binding Blast molecular function
DNA binding Blast molecular function
double-stranded DNA binding Blast molecular function
RNA binding Blast molecular function
protein binding Blast molecular function
ATP binding Blast molecular function
nucleus Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
zinc ion binding Blast molecular function
membrane Blast cellular component
hydrolase activity Blast molecular function
cell junction Blast cellular component
ubiquitin protein ligase binding Blast molecular function
identical protein binding Blast molecular function
cell projection Blast cellular component
metal ion binding Blast molecular function
nucleoside-triphosphatase activity Blast molecular function
cell projection membrane Blast cellular component
cell leading edge Blast cellular component
macromolecular complex binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

27 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 112 2.76e-27
nucleic acid binding Hs molecular function 97.8 4.20e-22
DNA binding Hs molecular function 112 2.76e-27
double-stranded DNA binding Hs molecular function 97.8 4.20e-22
RNA binding Hs molecular function 112 2.76e-27
double-stranded RNA binding Hs molecular function 112 2.76e-27
single-stranded RNA binding Hs molecular function 112 2.76e-27
helicase activity Hs molecular function 112 2.76e-27
protein binding Hs molecular function 112 2.76e-27
ATP binding Hs molecular function 112 2.76e-27
nucleus Hs cellular component 106 3.86e-25
cytoplasm Hs cellular component 112 2.76e-27
cytosol Hs cellular component 106 3.86e-25
cytoskeleton Hs cellular component 97.8 4.20e-22
plasma membrane Hs cellular component 97.8 4.20e-22
bicellular tight junction Hs cellular component 97.8 4.20e-22
zinc ion binding Hs molecular function 112 2.76e-27
actin cytoskeleton Hs cellular component 97.8 4.20e-22
membrane Hs cellular component 97.8 4.20e-22
hydrolase activity Hs molecular function 112 2.76e-27
cell junction Hs cellular component 97.8 4.20e-22
ubiquitin protein ligase binding Hs molecular function 97.8 4.20e-22
ruffle membrane Hs cellular component 97.8 4.20e-22
identical protein binding Hs molecular function 106 3.86e-25
cell projection Hs cellular component 97.8 4.20e-22
ribonucleoprotein complex binding Hs molecular function 106 3.86e-25
metal ion binding Hs molecular function 112 2.76e-27

GO (InterProScan)

No result

GO Term Analysis Type e-value

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