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Gene Card

Best human hits

TUBB; TUBB2B; TUBB4B

Species

P.mammillata

Unique Gene ID

Phmamm.g00008162

Gene Model ID

Phmamm.CG.MTP2014.S389.g08162

Location

S389:34945..37543

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S389.g08162.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

29 results

AHC0AAA12YG16

Plate: Plate_12_G16

AHC0AAA7YI04

Plate: Plate_7_I04

AHC0AAA9YI23

Plate: Plate_9_I23

AHC0AAA29YC16

Plate: Plate_29_C16

AHC0AAA33YH19

Plate: Plate_33_H19

AHC0AAA40YE23

Plate: Plate_40_E23

AHC0AAA45YK03

Plate: Plate_45_K03

AHC0AAA71YO07

Plate: Plate_71_O07

AHC0AAA103YL15

Plate: Plate_103_L15

AHC0AAA112YI17

Plate: Plate_112_I17

AHC0AAA118YL05

Plate: Plate_118_L05

AHC0AAA143YD17

Plate: Plate_143_D17

AHC0AAA145YJ11

Plate: Plate_145_J11

AHC0AAA145YN10

Plate: Plate_145_N10

AHC0AAA155YK14

Plate: Plate_155_K14

AHC0AAA81YF06

Plate: Plate_81_F06

AHC0AAA88YN02

Plate: Plate_88_N02

AHC0AAA175YP03

Plate: Plate_175_P03

AHC0AAA185YI13

Plate: Plate_185_I13

AHC0AAA189YF08

Plate: Plate_189_F08

AHC0AAA203YN06

Plate: Plate_203_N06

AHC0AAA205YM19

Plate: Plate_205_M19

AHC0AAA214YE11

Plate: Plate_214_E11

AHC0AAA218YN04

Plate: Plate_218_N04

AHC0AAA222YC17

Plate: Plate_222_C17

AHC0AAA243YE15

Plate: Plate_243_E15

AHC0AAA257YD14

Plate: Plate_257_D14

AHC0AAA257YO18

Plate: Plate_257_O18

AHC0AAA263YP15

Plate: Plate_263_P15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

15 results

IPR Term Analysis Definition
Tubulin PANTHER Tubulin
Tubulin PRINTS Tubulin
Tubulin_C Gene3D Tubulin, C-terminal
Beta-tubulin_BS ProSitePatterns Beta tubulin, autoregulation binding site
Beta_tubulin PANTHER Beta tubulin
Tubulin/FtsZ_2-layer-sand-dom SMART Tubulin/FtsZ, 2-layer sandwich domain
Tubulin/FtsZ_C_sf Gene3D Tubulin/FtsZ, C-terminal domain superfamily
Beta_tubulin PRINTS Beta tubulin
Tubulin_FtsZ_GTPase SMART Tubulin/FtsZ, GTPase domain
Tubulin/FtsZ_GTPase_sf SUPERFAMILY Tubulin/FtsZ, GTPase domain superfamily
Tubulin/FtsZ_2-layer-sand-dom Pfam Tubulin/FtsZ, 2-layer sandwich domain
Tubulin_CS ProSitePatterns Tubulin, conserved site
Tubulin_FtsZ_GTPase Pfam Tubulin/FtsZ, GTPase domain
Tub_FtsZ_C SUPERFAMILY Tubulin/FtsZ, C-terminal
Tubulin/FtsZ_GTPase_sf Gene3D Tubulin/FtsZ, GTPase domain superfamily

GOSlim

32 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
GTPase activity Blast molecular function
structural molecule activity Blast molecular function
protein binding Blast molecular function
GTP binding Blast molecular function
extracellular region Blast cellular component
nucleus Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
microtubule Blast cellular component
microtubule-based process InterProScan biological process
microtubule cytoskeleton Blast cellular component
ubiquitin protein ligase binding Blast molecular function
myelin sheath Blast cellular component
cell body Blast cellular component
protein heterodimerization activity Blast molecular function
unfolded protein binding Blast molecular function
extracellular exosome Blast cellular component
extracellular vesicle Blast cellular component
RNA binding Blast molecular function
organelle organization Blast biological process
nuclear envelope Blast cellular component
intracellular organelle lumen Blast cellular component
cytoplasmic vesicle Blast cellular component
lysosome Blast cellular component
vacuolar part Blast cellular component
endomembrane system Blast cellular component
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
macromolecular complex Blast cellular component
receptor binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 929 0.0
double-stranded RNA binding Hs molecular function 929 0.0
GTPase activity Hs molecular function 929 0.0
structural molecule activity Hs molecular function 913 0.0
structural constituent of cytoskeleton Hs molecular function 929 0.0
protein binding Hs molecular function 918 0.0
GTP binding Hs molecular function 929 0.0
extracellular region Hs cellular component 929 0.0
nucleus Hs cellular component 929 0.0
nuclear envelope lumen Hs cellular component 913 0.0
cytoplasm Hs cellular component 929 0.0
cytosol Hs cellular component 929 0.0
cytoskeleton Hs cellular component 929 0.0
microtubule Hs cellular component 929 0.0
microtubule cytoskeleton Hs cellular component 918 0.0
ubiquitin protein ligase binding Hs molecular function 913 0.0
azurophil granule lumen Hs cellular component 929 0.0
cytoplasmic ribonucleoprotein granule Hs cellular component 913 0.0
MHC class I protein binding Hs molecular function 929 0.0
myelin sheath Hs cellular component 929 0.0
cell body Hs cellular component 913 0.0
protein heterodimerization activity Hs molecular function 918 0.0
unfolded protein binding Hs molecular function 929 0.0
extracellular exosome Hs cellular component 929 0.0
extracellular vesicle Hs cellular component 929 0.0

GO (InterProScan)

5 results

GO Term Analysis Type e-value
GTPase activity SMART molecular function 2.1E-69
structural constituent of cytoskeleton PANTHER molecular function 0.0
GTP binding PANTHER molecular function 0.0
microtubule PANTHER cellular component 0.0
microtubule-based process PANTHER biological process 0.0





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