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GENE CARD

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Gene Card

Best human hits

COL11A1; COL11A2; COL5A3

Species

P.mammillata

Unique Gene ID

Phmamm.g00008467

Gene Model ID

Phmamm.CG.MTP2014.S416.g08467

Location

S416:28441..51631

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S416.g08467.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

37 results

AHC0AAA1YJ18

Plate: Plate_1_J18

AHC0AAA18YP23

Plate: Plate_18_P23

AHC0AAA19YG03

Plate: Plate_19_G03

AHC0AAA22YL10

Plate: Plate_22_L10

AHC0AAA3YP18

Plate: Plate_3_P18

AHC0AAA36YG04

Plate: Plate_36_G04

AHC0AAA44YL05

Plate: Plate_44_L05

AHC0AAA51YN22

Plate: Plate_51_N22

AHC0AAA77YE16

Plate: Plate_77_E16

AHC0AAA110YB04

Plate: Plate_110_B04

AHC0AAA127YL20

Plate: Plate_127_L20

AHC0AAA129YP24

Plate: Plate_129_P24

AHC0AAA151YB19

Plate: Plate_151_B19

AHC0AAA154YC24

Plate: Plate_154_C24

AHC0AAA85YO15

Plate: Plate_85_O15

AHC0AAA87YA23

Plate: Plate_87_A23

AHC0AAA88YC15

Plate: Plate_88_C15

AHC0AAA95YF05

Plate: Plate_95_F05

AHC0AAA98YO21

Plate: Plate_98_O21

AHC0AAA159YJ21

Plate: Plate_159_J21

AHC0AAA173YG01

Plate: Plate_173_G01

AHC0AAA191YL01

Plate: Plate_191_L01

AHC0AAA196YI04

Plate: Plate_196_I04

AHC0AAA217YF22

Plate: Plate_217_F22

AHC0AAA222YL02

Plate: Plate_222_L02

AHC0AAA226YA04

Plate: Plate_226_A04

AHC0AAA229YN07

Plate: Plate_229_N07

AHC0AAA233YA20

Plate: Plate_233_A20

AHC0AAA242YB07

Plate: Plate_242_B07

AHC0AAA243YN21

Plate: Plate_243_N21

AHC0AAA249YM07

Plate: Plate_249_M07

AHC0AAA255YP19

Plate: Plate_255_P19

AHC0AAA257YC14

Plate: Plate_257_C14

AHC0AAA261YE11

Plate: Plate_261_E11

AHC0AAA262YD18

Plate: Plate_262_D18

AHC0AAA266YM11

Plate: Plate_266_M11

AHC0AAA98YA19

Plate: Plate_98_A19

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Laminin_G SMART Laminin G domain
Fib_collagen_C ProDom Fibrillar collagen, C-terminal
Fib_collagen_C SMART Fibrillar collagen, C-terminal
Fib_collagen_C Pfam Fibrillar collagen, C-terminal
Fib_collagen_C ProSiteProfiles Fibrillar collagen, C-terminal
ConA-like_dom_sf SUPERFAMILY Concanavalin A-like lectin/glucanase domain superfamily
Laminin_G ProSiteProfiles Laminin G domain
Laminin_G Pfam Laminin G domain
Collagen Pfam Collagen triple helix repeat

GOSlim

35 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
extracellular region Orthology cellular component
extracellular space Orthology cellular component
endoplasmic reticulum lumen Orthology cellular component
visual perception Orthology biological process
sensory perception of sound Orthology biological process
extracellular matrix organization Orthology biological process
metal ion binding Orthology molecular function
extracellular exosome Orthology cellular component
blood vessel development Orthology biological process
integrin binding Orthology molecular function
ribosome Orthology cellular component
cell adhesion Orthology biological process
cell migration Orthology biological process
system development Orthology biological process
animal organ development Orthology biological process
anatomical structure morphogenesis Orthology biological process
cell development Orthology biological process
heart development Orthology biological process
extracellular region part Orthology cellular component
structural molecule activity Orthology molecular function
macromolecular complex binding Orthology molecular function
macromolecular complex Orthology cellular component
protein metabolic process Orthology biological process
anion binding Orthology molecular function
carbohydrate derivative binding Orthology molecular function
catabolic process Orthology biological process
anatomical structure formation involved in morphogenesis Orthology biological process
multicellular organism development Orthology biological process
cell differentiation Orthology biological process
anatomical structure development Orthology biological process
binding Orthology molecular function
biosynthetic process Orthology biological process
wound healing Orthology biological process
cellular component organization Orthology biological process

GO (Orthology)

54 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
skeletal system development Hs biological process
cartilage condensation Hs biological process
ossification Hs biological process
chondrocyte development Hs biological process
heart morphogenesis Hs biological process
extracellular matrix structural constituent Hs molecular function
protein binding Hs molecular function
collagen binding Hs molecular function
extracellular region Hs cellular component
proteinaceous extracellular matrix Hs cellular component
collagen trimer Hs cellular component
collagen type V trimer Hs cellular component
collagen type XI trimer Hs cellular component
extracellular space Hs cellular component
endoplasmic reticulum lumen Hs cellular component
proteoglycan metabolic process Hs biological process
cell-matrix adhesion Hs biological process
visual perception Hs biological process
sensory perception of sound Hs biological process
heparin binding Hs molecular function
extracellular matrix structural constituent conferring tensile strength Hs molecular function
extracellular matrix organization Hs biological process
collagen fibril organization Hs biological process
collagen catabolic process Hs biological process
protein binding, bridging Hs molecular function
extracellular matrix Hs cellular component
endodermal cell differentiation Hs biological process
tendon development Hs biological process
inner ear morphogenesis Hs biological process
proteoglycan binding Hs molecular function
skin development Hs biological process
metal ion binding Hs molecular function
skeletal system morphogenesis Hs biological process
extracellular matrix binding Hs molecular function
detection of mechanical stimulus involved in sensory perception of sound Hs biological process
cartilage development Hs biological process
ventricular cardiac muscle tissue morphogenesis Hs biological process
palate development Hs biological process
soft palate development Hs biological process
extracellular exosome Hs cellular component
blood vessel development Hs biological process
osteoblast differentiation Hs biological process
tissue homeostasis Hs biological process
chondrocyte differentiation Hs biological process
integrin binding Hs molecular function
basement membrane Hs cellular component
ribosome Hs cellular component
cell adhesion Hs biological process
cell migration Hs biological process
collagen biosynthetic process Hs biological process
wound healing, spreading of epidermal cells Hs biological process
platelet-derived growth factor binding Hs molecular function
eye morphogenesis Hs biological process
supramolecular fiber organization Hs biological process

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
extracellular matrix structural constituent Hs molecular function 645 0.0
protein binding Hs molecular function 518 3.28e-156
collagen binding Hs molecular function 622 0.0
extracellular region Hs cellular component 645 0.0
proteinaceous extracellular matrix Hs cellular component 645 0.0
collagen trimer Hs cellular component 645 0.0
collagen type V trimer Hs cellular component 622 0.0
collagen type XI trimer Hs cellular component 645 0.0
extracellular space Hs cellular component 645 0.0
endoplasmic reticulum lumen Hs cellular component 645 0.0
heparin binding Hs molecular function 622 0.0
extracellular matrix structural constituent conferring tensile strength Hs molecular function 518 3.28e-156
protein binding, bridging Hs molecular function 645 0.0
extracellular matrix Hs cellular component 645 0.0
proteoglycan binding Hs molecular function 622 0.0
metal ion binding Hs molecular function 645 0.0
extracellular matrix binding Hs molecular function 645 0.0
extracellular exosome Hs cellular component 622 0.0

GO (InterProScan)

1 result

GO Term Analysis Type e-value
extracellular matrix structural constituent SMART molecular function 3.0E-62