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Gene Card

Best human hits

BBS2; FN1; TNC

Species

P.mammillata

Unique Gene ID

Phmamm.g00008476

Gene Model ID

Phmamm.CG.MTP2014.S417.g08476

Location

S417:16684..57632

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S417.g08476.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

3 results

AHC0AAA186YM03

Plate: Plate_186_M03

AHC0AAA206YC03

Plate: Plate_206_C03

AHC0AAA253YK10

Plate: Plate_253_K10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

18 results

IPR Term Analysis Definition
FN3_dom ProSiteProfiles Fibronectin type III
FN3_dom CDD Fibronectin type III
BBS2_Mid Pfam Ciliary BBSome complex subunit 2, middle region
Ig-like_fold Gene3D Immunoglobulin-like fold
FN3_sf SUPERFAMILY Fibronectin type III superfamily
Fibronectin_type1 ProSiteProfiles Fibronectin, type I
FN3_dom Pfam Fibronectin type III
Fibronectin_type1 CDD Fibronectin, type I
WD40_repeat_dom_sf SUPERFAMILY WD40-repeat-containing domain superfamily
Fibronectin_type1 SMART Fibronectin, type I
Ig_sub SMART Immunoglobulin subtype
Ig_sub2 SMART Immunoglobulin subtype 2
Ig-like_dom_sf SUPERFAMILY Immunoglobulin-like domain superfamily
FN3_dom SMART Fibronectin type III
BBS2_C Pfam Ciliary BBSome complex subunit 2, C-terminal domain
Ig-like_dom ProSiteProfiles Immunoglobulin-like domain
Fibronectin_type1 Pfam Fibronectin, type I
Fibronectin_type1 ProSitePatterns Fibronectin, type I

GOSlim

43 results

GO Term Annotation Origin Type
receptor binding Blast molecular function
integrin binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
cytoplasm Blast cellular component
endoplasmic reticulum lumen Blast cellular component
microtubule organizing center Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
focal adhesion Blast cellular component
protein C-terminus binding Blast molecular function
membrane Blast cellular component
apical plasma membrane Blast cellular component
enzyme binding Blast molecular function
identical protein binding Blast molecular function
cell projection Blast cellular component
extracellular exosome Blast cellular component
transcription factor binding Blast molecular function
macromolecular complex binding Blast molecular function
macromolecular complex Blast cellular component
extracellular region part Blast cellular component
cytoplasmic part Blast cellular component
intracellular membrane-bounded organelle Blast cellular component
plasma membrane region Blast cellular component
cytoskeletal part Blast cellular component
organelle Blast cellular component
anion binding Blast molecular function
carbohydrate derivative binding Blast molecular function
peptidase activity Blast molecular function
positive regulation of hydrolase activity Blast biological process
enzyme activator activity Blast molecular function
intracellular organelle part Blast cellular component
cytoplasmic vesicle Blast cellular component
endomembrane system Blast cellular component
intracellular organelle lumen Blast cellular component
neuron projection Blast cellular component
cluster of actin-based cell projections Blast cellular component
organelle part Blast cellular component
cell projection part Blast cellular component
cell projection membrane Blast cellular component
bounding membrane of organelle Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

43 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II repressing transcription factor binding Hs molecular function 288 1.85e-82
protease binding Hs molecular function 214 4.68e-55
receptor binding Hs molecular function 214 4.68e-55
integrin binding Hs molecular function 214 4.68e-55
protein binding Hs molecular function 288 1.85e-82
collagen binding Hs molecular function 214 4.68e-55
extracellular region Hs cellular component 214 4.68e-55
fibrinogen complex Hs cellular component 214 4.68e-55
proteinaceous extracellular matrix Hs cellular component 214 4.68e-55
basement membrane Hs cellular component 214 4.68e-55
basal lamina Hs cellular component 214 4.68e-55
interstitial matrix Hs cellular component 144 6.17e-34
extracellular space Hs cellular component 214 4.68e-55
cytoplasm Hs cellular component 288 1.85e-82
endoplasmic reticulum lumen Hs cellular component 214 4.68e-55
endoplasmic reticulum-Golgi intermediate compartment Hs cellular component 214 4.68e-55
microtubule organizing center Hs cellular component 288 1.85e-82
cytosol Hs cellular component 288 1.85e-82
cytoskeleton Hs cellular component 288 1.85e-82
plasma membrane Hs cellular component 288 1.85e-82
microvillus Hs cellular component 288 1.85e-82
focal adhesion Hs cellular component 144 6.17e-34
cilium Hs cellular component 288 1.85e-82
protein C-terminus binding Hs molecular function 214 4.68e-55
heparin binding Hs molecular function 214 4.68e-55
membrane Hs cellular component 288 1.85e-82
apical plasma membrane Hs cellular component 214 4.68e-55
peptidase activator activity Hs molecular function 214 4.68e-55
enzyme binding Hs molecular function 214 4.68e-55
extracellular matrix Hs cellular component 214 4.68e-55
platelet alpha granule lumen Hs cellular component 214 4.68e-55
motile cilium Hs cellular component 288 1.85e-82
stereocilium Hs cellular component 288 1.85e-82
BBSome Hs cellular component 288 1.85e-82
ciliary basal body Hs cellular component 288 1.85e-82
identical protein binding Hs molecular function 214 4.68e-55
cell projection Hs cellular component 288 1.85e-82
syndecan binding Hs molecular function 144 6.17e-34
chaperone binding Hs molecular function 214 4.68e-55
ciliary membrane Hs cellular component 288 1.85e-82
extracellular exosome Hs cellular component 214 4.68e-55
blood microparticle Hs cellular component 214 4.68e-55
disordered domain specific binding Hs molecular function 214 4.68e-55

GO (InterProScan)

2 results

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 1.85E-22
extracellular region Pfam cellular component 1.5E-4

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