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GENE CARD

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Gene Card

Best human hits

ARNT; ARNT2; ARNTL

Species

P.mammillata

Unique Gene ID

Phmamm.g00008557

Gene Model ID

Phmamm.CG.MTP2014.S422.g08557

Location

S422:85420..92892

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S422.g08557.01.t
Phmamm.CG.MTP2014.S422.g08557.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

15 results

AHC0AAA28YC10

Plate: Plate_28_C10

AHC0AAA44YN02

Plate: Plate_44_N02

AHC0AAA49YE05

Plate: Plate_49_E05

AHC0AAA50YN08

Plate: Plate_50_N08

AHC0AAA51YL04

Plate: Plate_51_L04

AHC0AAA73YD18

Plate: Plate_73_D18

AHC0AAA74YG13

Plate: Plate_74_G13

AHC0AAA75YK16

Plate: Plate_75_K16

AHC0AAA111YE18

Plate: Plate_111_E18

AHC0AAA134YM09

Plate: Plate_134_M09

AHC0AAA93YJ01

Plate: Plate_93_J01

AHC0AAA166YD10

Plate: Plate_166_D10

AHC0AAA207YH01

Plate: Plate_207_H01

AHC0AAA240YC05

Plate: Plate_240_C05

AHC0AAA259YA13

Plate: Plate_259_A13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term Analysis Definition
PAS ProSiteProfiles PAS domain
PAS TIGRFAM PAS domain
PAS SMART PAS domain
PAS CDD PAS domain
PAS-like_dom_sf SUPERFAMILY PAS domain superfamily
Nuc_translocat PRINTS Nuclear translocator
PAS_fold Pfam PAS fold
PAC SMART PAC motif
bHLH_dom CDD Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom SMART Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain
HLH_DNA-bd_sf SUPERFAMILY Helix-loop-helix DNA-binding domain superfamily
bHLH_dom Pfam Myc-type, basic helix-loop-helix (bHLH) domain
HLH_DNA-bd_sf Gene3D Helix-loop-helix DNA-binding domain superfamily

GOSlim

41 results

GO Term Annotation Origin Type
transcription regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription factor activity, transcription factor binding Orthology molecular function
response to hypoxia Orthology biological process
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription coactivator activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
central nervous system development Orthology biological process
brain development Orthology biological process
transcription factor binding Orthology molecular function
positive regulation of cell proliferation Orthology biological process
nuclear body Orthology cellular component
cell differentiation Orthology biological process
negative regulation of apoptotic process Orthology biological process
intracellular membrane-bounded organelle Blast cellular component
sequence-specific DNA binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
protein heterodimerization activity Orthology molecular function
protein dimerization activity Orthology molecular function
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
cellular metabolic process Orthology biological process
receptor binding Orthology molecular function
signal transduction Orthology biological process
response to lipid Orthology biological process
transcription regulatory region DNA binding Orthology molecular function
mRNA metabolic process Orthology biological process
immune system process Orthology biological process
animal organ development Orthology biological process
nuclear part Orthology cellular component
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component

GO (Orthology)

40 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription factor activity, transcription factor binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
response to hypoxia Hs biological process
positive regulation of endothelial cell proliferation Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function
transcription coactivator activity Hs molecular function
aryl hydrocarbon receptor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor complex Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
xenobiotic metabolic process Hs biological process
central nervous system development Hs biological process
brain development Hs biological process
transcription factor binding Hs molecular function
positive regulation of cell proliferation Hs biological process
positive regulation of vascular endothelial growth factor production Hs biological process
nuclear body Hs cellular component
aryl hydrocarbon receptor binding Hs molecular function
cell differentiation Hs biological process
intracellular receptor signaling pathway Hs biological process
response to estradiol Hs biological process
enhancer binding Hs molecular function
mRNA transcription from RNA polymerase II promoter Hs biological process
negative regulation of apoptotic process Hs biological process
sequence-specific DNA binding Hs molecular function
positive regulation of erythrocyte differentiation Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
protein heterodimerization activity Hs molecular function
protein dimerization activity Hs molecular function
RNA polymerase II transcription factor complex Hs cellular component

GO (Blast)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription regulatory region sequence-specific DNA binding Hs molecular function 332 1.36e-106
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 491 8.50e-167
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 506 6.64e-172
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 332 1.36e-106
transcription factor activity, transcription factor binding Hs molecular function 506 6.64e-172
core promoter sequence-specific DNA binding Hs molecular function 332 1.36e-106
core promoter binding Hs molecular function 332 1.36e-106
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 491 8.50e-167
transcriptional activator activity, RNA polymerase II transcription factor binding Hs molecular function 332 1.36e-106
DNA binding Hs molecular function 506 6.64e-172
transcription factor activity, sequence-specific DNA binding Hs molecular function 506 6.64e-172
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 506 6.64e-172
transcription coactivator activity Hs molecular function 506 6.64e-172
aryl hydrocarbon receptor activity Hs molecular function 506 6.64e-172
protein binding Hs molecular function 506 6.64e-172
nucleus Hs cellular component 506 6.64e-172
nucleoplasm Hs cellular component 506 6.64e-172
transcription factor complex Hs cellular component 506 6.64e-172
cytoplasm Hs cellular component 506 6.64e-172
transcription factor binding Hs molecular function 506 6.64e-172
nuclear body Hs cellular component 506 6.64e-172
PML body Hs cellular component 332 1.36e-106
aryl hydrocarbon receptor binding Hs molecular function 506 6.64e-172
chromatoid body Hs cellular component 332 1.36e-106
enhancer binding Hs molecular function 506 6.64e-172
intracellular membrane-bounded organelle Hs cellular component 332 1.36e-106
bHLH transcription factor binding Hs molecular function 332 1.36e-106
sequence-specific DNA binding Hs molecular function 506 6.64e-172
protein heterodimerization activity Hs molecular function 506 6.64e-172
protein dimerization activity Hs molecular function 506 6.64e-172
Hsp90 protein binding Hs molecular function 332 1.36e-106
repressing transcription factor binding Hs molecular function 332 1.36e-106
E-box binding Hs molecular function 332 1.36e-106
RNA polymerase II transcription factor complex Hs cellular component 506 6.64e-172

GO (InterProScan)

6 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding PRINTS molecular function 1.4E-77
nucleus PRINTS cellular component 1.4E-77
transcription factor complex PRINTS cellular component 1.4E-77
cytoplasm PRINTS cellular component 1.4E-77
regulation of transcription, DNA-templated PRINTS biological process 1.4E-77
protein dimerization activity Gene3D molecular function 2.1E-21

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