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Gene Card

Best human hits

MUC4; SF3B1

Species

P.mammillata

Unique Gene ID

Phmamm.g00008612

Gene Model ID

Phmamm.CG.MTP2014.S427.g08612

Location

S427:38322..52243

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S427.g08612.01.t
Phmamm.CG.MTP2014.S427.g08612.02.t
Phmamm.CG.MTP2014.S427.g08612.03.t
Phmamm.CG.MTP2014.S427.g08612.04.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

24 results

AHC0AAA15YN08

Plate: Plate_15_N08

AHC0AAA17YJ11

Plate: Plate_17_J11

AHC0AAA20YA23

Plate: Plate_20_A23

AHC0AAA43YL01

Plate: Plate_43_L01

AHC0AAA46YL07

Plate: Plate_46_L07

AHC0AAA52YC04

Plate: Plate_52_C04

AHC0AAA104YE06

Plate: Plate_104_E06

AHC0AAA107YL13

Plate: Plate_107_L13

AHC0AAA121YL02

Plate: Plate_121_L02

AHC0AAA133YK11

Plate: Plate_133_K11

AHC0AAA154YB20

Plate: Plate_154_B20

AHC0AAA85YF15

Plate: Plate_85_F15

AHC0AAA90YA10

Plate: Plate_90_A10

AHC0AAA133YK09

Plate: Plate_133_K09

AHC0AAA165YH21

Plate: Plate_165_H21

AHC0AAA182YM08

Plate: Plate_182_M08

AHC0AAA195YL05

Plate: Plate_195_L05

AHC0AAA200YE16

Plate: Plate_200_E16

AHC0AAA209YN12

Plate: Plate_209_N12

AHC0AAA214YL03

Plate: Plate_214_L03

AHC0AAA217YO22

Plate: Plate_217_O22

AHC0AAA229YO19

Plate: Plate_229_O19

AHC0AAA253YH10

Plate: Plate_253_H10

AHC0AAA258YC01

Plate: Plate_258_C01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
ARM-type_fold SUPERFAMILY Armadillo-type fold
SF3b_su1 Pfam Splicing factor 3B subunit 1
ARM-like Gene3D Armadillo-like helical

GOSlim

15 results

GO Term Annotation Origin Type
RNA splicing, via transesterification reactions Orthology biological process
mRNA splicing, via spliceosome Orthology biological process
RNA binding Orthology molecular function
binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
mRNA processing Orthology biological process
RNA splicing Orthology biological process
membrane Blast cellular component
integral component of membrane Blast cellular component
nuclear speck Orthology cellular component
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
positive regulation of gene expression Orthology biological process

GO (Orthology)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
spliceosomal complex assembly Hs biological process
RNA splicing, via transesterification reactions Hs biological process
mRNA splicing, via spliceosome Hs biological process
RNA binding Hs molecular function
mRNA binding Hs molecular function
binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
U2 snRNP Hs cellular component
U12-type spliceosomal complex Hs cellular component
mRNA processing Hs biological process
RNA splicing Hs biological process
nuclear speck Hs cellular component
U11/U12 snRNP Hs cellular component
positive regulation of gene expression, epigenetic Hs biological process
U2-type prespliceosome Hs cellular component
catalytic step 2 spliceosome Hs cellular component

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA binding Hs molecular function 2026 0.0
mRNA binding Hs molecular function 2026 0.0
binding Hs molecular function 2026 0.0
protein binding Hs molecular function 2026 0.0
nucleus Hs cellular component 2026 0.0
nucleoplasm Hs cellular component 2026 0.0
spliceosomal complex Hs cellular component 2026 0.0
U2 snRNP Hs cellular component 2026 0.0
U12-type spliceosomal complex Hs cellular component 2026 0.0
membrane Hs cellular component 43.1 0.002
integral component of membrane Hs cellular component 43.1 0.002
nuclear speck Hs cellular component 2026 0.0
U11/U12 snRNP Hs cellular component 2026 0.0
U2-type prespliceosome Hs cellular component 2026 0.0
catalytic step 2 spliceosome Hs cellular component 2026 0.0

GO (InterProScan)

3 results

GO Term Analysis Type e-value
spliceosomal complex assembly PANTHER biological process 0.0
mRNA binding PANTHER molecular function 0.0
binding SUPERFAMILY molecular function 8.42E-96

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