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  1. Gene 'Harore.CG.MTP2014.S3...'

Gene Card

Best human hits

HNRNPA1; HNRNPA1L2; HNRNPA3

Species

P.mammillata

Unique Gene ID

Phmamm.g00008615

Gene Model ID

Phmamm.CG.MTP2014.S427.g08615

Location

S427:93142..105700

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S427.g08615.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

41 results

AHC0AAA1YD09

Plate: Plate_1_D09

AHC0AAA24YB19

Plate: Plate_24_B19

AHC0AAA24YH08

Plate: Plate_24_H08

AHC0AAA28YA02

Plate: Plate_28_A02

AHC0AAA39YG02

Plate: Plate_39_G02

AHC0AAA42YL04

Plate: Plate_42_L04

AHC0AAA45YG16

Plate: Plate_45_G16

AHC0AAA49YL03

Plate: Plate_49_L03

AHC0AAA51YA13

Plate: Plate_51_A13

AHC0AAA54YB23

Plate: Plate_54_B23

AHC0AAA54YJ23

Plate: Plate_54_J23

AHC0AAA57YC10

Plate: Plate_57_C10

AHC0AAA66YI19

Plate: Plate_66_I19

AHC0AAA69YN10

Plate: Plate_69_N10

AHC0AAA70YI18

Plate: Plate_70_I18

AHC0AAA100YM19

Plate: Plate_100_M19

AHC0AAA103YB10

Plate: Plate_103_B10

AHC0AAA110YH09

Plate: Plate_110_H09

AHC0AAA114YI08

Plate: Plate_114_I08

AHC0AAA115YN14

Plate: Plate_115_N14

AHC0AAA126YD05

Plate: Plate_126_D05

AHC0AAA131YA16

Plate: Plate_131_A16

AHC0AAA133YD23

Plate: Plate_133_D23

AHC0AAA134YD01

Plate: Plate_134_D01

AHC0AAA140YK24

Plate: Plate_140_K24

AHC0AAA141YD18

Plate: Plate_141_D18

AHC0AAA151YL19

Plate: Plate_151_L19

AHC0AAA153YK11

Plate: Plate_153_K11

AHC0AAA155YO12

Plate: Plate_155_O12

AHC0AAA91YJ04

Plate: Plate_91_J04

AHC0AAA91YK24

Plate: Plate_91_K24

AHC0AAA133YD21

Plate: Plate_133_D21

AHC0AAA185YB06

Plate: Plate_185_B06

AHC0AAA191YJ18

Plate: Plate_191_J18

AHC0AAA213YO01

Plate: Plate_213_O01

AHC0AAA221YP19

Plate: Plate_221_P19

AHC0AAA252YC21

Plate: Plate_252_C21

AHC0AAA252YF16

Plate: Plate_252_F16

AHC0AAA260YE19

Plate: Plate_260_E19

AHC0AAA39YI04

Plate: Plate_39_I04

AHC0AAA54YJ21

Plate: Plate_54_J21

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
RRM_dom Pfam RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom ProSiteProfiles RNA recognition motif domain
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom SMART RNA recognition motif domain

GOSlim

43 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
mRNA processing Orthology biological process
RNA splicing Orthology biological process
membrane Orthology cellular component
RNA metabolic process Orthology biological process
neuron projection Orthology cellular component
extracellular exosome Orthology cellular component
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
extracellular region Orthology cellular component
protein kinase binding Orthology molecular function
response to lipopolysaccharide Orthology biological process
regulation of gene expression Orthology biological process
DNA binding Orthology molecular function
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
organic substance transport Orthology biological process
intracellular transport Orthology biological process
cell surface receptor signaling pathway Orthology biological process
cellular response to organic substance Orthology biological process
organelle organization Orthology biological process
DNA metabolic process Orthology biological process
transferase activity, transferring phosphorus-containing groups Orthology molecular function
intracellular non-membrane-bounded organelle Orthology cellular component
cell communication Orthology biological process
cellular response to stress Orthology biological process
transmembrane transport Orthology biological process
sequence-specific DNA binding Orthology molecular function
intracellular organelle part Orthology cellular component
intracellular protein transport Orthology biological process
gene expression Orthology biological process
defense response Orthology biological process
nuclear body Orthology cellular component
nuclear lumen Orthology cellular component
RNA processing Orthology biological process
negative regulation of gene expression Orthology biological process
mRNA catabolic process Orthology biological process
positive regulation of gene expression Orthology biological process

GO (Orthology)

56 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
regulation of alternative mRNA splicing, via spliceosome Hs biological process
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
single-stranded DNA binding Hs molecular function
RNA binding Hs molecular function
single-stranded RNA binding Hs molecular function
mRNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
cytoplasm Hs cellular component
mRNA processing Hs biological process
RNA export from nucleus Hs biological process
RNA splicing Hs biological process
fibroblast growth factor receptor signaling pathway Hs biological process
membrane Hs cellular component
viral process Hs biological process
RNA metabolic process Hs biological process
protein domain specific binding Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
negative regulation of telomere maintenance via telomerase Hs biological process
positive regulation of telomere maintenance via telomerase Hs biological process
miRNA binding Hs molecular function
ribonucleoprotein granule Hs cellular component
pre-mRNA binding Hs molecular function
cellular response to glucose starvation Hs biological process
neuron projection Hs cellular component
mRNA transport Hs biological process
RNA transmembrane transporter activity Hs molecular function
nuclear export Hs biological process
nuclear import Hs biological process
telomeric repeat-containing RNA binding Hs molecular function
extracellular exosome Hs cellular component
catalytic step 2 spliceosome Hs cellular component
G-rich strand telomeric DNA binding Hs molecular function
messenger ribonucleoprotein complex Hs cellular component
negative regulation of transcription from RNA polymerase II promoter Hs biological process
chromosome, telomeric region Hs cellular component
mRNA 3'-UTR binding Hs molecular function
extracellular region Hs cellular component
mRNA export from nucleus Hs biological process
inflammatory response Hs biological process
Cajal body Hs cellular component
nuclear matrix Hs cellular component
AU-rich element binding Hs molecular function
protein kinase binding Hs molecular function
primary miRNA processing Hs biological process
response to lipopolysaccharide Hs biological process
single-stranded telomeric DNA binding Hs molecular function
G-quadruplex DNA unwinding Hs biological process
negative regulation of mRNA splicing, via spliceosome Hs biological process
RNA transport Hs biological process
3'-UTR-mediated mRNA stabilization Hs biological process
pre-mRNA intronic binding Hs molecular function
N6-methyladenosine-containing RNA binding Hs molecular function

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleic acid binding Hs molecular function 280 1.13e-89
single-stranded DNA binding Hs molecular function 280 1.13e-89
RNA binding Hs molecular function 280 1.13e-89
single-stranded RNA binding Hs molecular function 280 1.13e-89
mRNA binding Hs molecular function 275 9.14e-88
protein binding Hs molecular function 280 1.13e-89
nucleus Hs cellular component 280 1.13e-89
nucleoplasm Hs cellular component 280 1.13e-89
spliceosomal complex Hs cellular component 280 1.13e-89
cytoplasm Hs cellular component 280 1.13e-89
membrane Hs cellular component 280 1.13e-89
protein domain specific binding Hs molecular function 280 1.13e-89
intracellular ribonucleoprotein complex Hs cellular component 280 1.13e-89
miRNA binding Hs molecular function 280 1.13e-89
ribonucleoprotein granule Hs cellular component 275 9.14e-88
pre-mRNA binding Hs molecular function 280 1.13e-89
neuron projection Hs cellular component 275 9.14e-88
RNA transmembrane transporter activity Hs molecular function 275 9.14e-88
telomeric repeat-containing RNA binding Hs molecular function 280 1.13e-89
extracellular exosome Hs cellular component 280 1.13e-89
catalytic step 2 spliceosome Hs cellular component 280 1.13e-89
G-rich strand telomeric DNA binding Hs molecular function 280 1.13e-89
messenger ribonucleoprotein complex Hs cellular component 275 9.14e-88

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 3.36E-28