Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

ADGRB2; HMCN1; THBS1

Species

P.mammillata

Unique Gene ID

Phmamm.g00001721

Gene Model ID

Phmamm.CG.MTP2014.S45.g01721

Location

S45:164740..171655

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

26 results

AHC0AAA17YP14

Plate: Plate_17_P14

AHC0AAA22YP12

Plate: Plate_22_P12

AHC0AAA24YO22

Plate: Plate_24_O22

AHC0AAA25YO09

Plate: Plate_25_O09

AHC0AAA33YC12

Plate: Plate_33_C12

AHC0AAA34YB02

Plate: Plate_34_B02

AHC0AAA36YI23

Plate: Plate_36_I23

AHC0AAA49YB24

Plate: Plate_49_B24

AHC0AAA68YA02

Plate: Plate_68_A02

AHC0AAA74YD06

Plate: Plate_74_D06

AHC0AAA101YO21

Plate: Plate_101_O21

AHC0AAA121YC01

Plate: Plate_121_C01

AHC0AAA127YF16

Plate: Plate_127_F16

AHC0AAA140YN02

Plate: Plate_140_N02

AHC0AAA141YA20

Plate: Plate_141_A20

AHC0AAA153YI21

Plate: Plate_153_I21

AHC0AAA155YH15

Plate: Plate_155_H15

AHC0AAA156YC01

Plate: Plate_156_C01

AHC0AAA84YK02

Plate: Plate_84_K02

AHC0AAA163YI17

Plate: Plate_163_I17

AHC0AAA184YL08

Plate: Plate_184_L08

AHC0AAA200YI03

Plate: Plate_200_I03

AHC0AAA241YD08

Plate: Plate_241_D08

AHC0AAA253YI07

Plate: Plate_253_I07

AHC0AAA263YL18

Plate: Plate_263_L18

AHC0AAA266YE10

Plate: Plate_266_E10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
TSP1_rpt ProSiteProfiles Thrombospondin type-1 (TSP1) repeat
TSP1_rpt_sf SUPERFAMILY Thrombospondin type-1 (TSP1) repeat superfamily
TSP1_rpt SMART Thrombospondin type-1 (TSP1) repeat
TSP1_rpt_sf Gene3D Thrombospondin type-1 (TSP1) repeat superfamily
TSP1_rpt Pfam Thrombospondin type-1 (TSP1) repeat

GOSlim

33 results

GO Term Annotation Origin Type
signal transducer activity Blast molecular function
transmembrane signaling receptor activity Blast molecular function
G-protein coupled receptor activity Blast molecular function
integrin binding Blast molecular function
calcium ion binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
cytoplasm Blast cellular component
endoplasmic reticulum Blast cellular component
endoplasmic reticulum lumen Blast cellular component
centrosome Blast cellular component
plasma membrane Blast cellular component
cell surface Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
cell junction Blast cellular component
identical protein binding Blast molecular function
extracellular exosome Blast cellular component
anion binding Blast molecular function
macromolecular complex Blast cellular component
extracellular region part Blast cellular component
cell periphery Blast cellular component
cytoplasmic part Blast cellular component
carbohydrate derivative binding Blast molecular function
plasma membrane part Blast cellular component
cytoplasmic vesicle Blast cellular component
endomembrane system Blast cellular component
macromolecular complex binding Blast molecular function
intracellular organelle part Blast cellular component
intracellular organelle lumen Blast cellular component
plasma membrane region Blast cellular component
binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

41 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
phosphatidylserine binding Hs molecular function 71.6 4.39e-13
fibronectin binding Hs molecular function 71.6 4.39e-13
signal transducer activity Hs molecular function 73.6 1.27e-13
transmembrane signaling receptor activity Hs molecular function 73.6 1.27e-13
G-protein coupled receptor activity Hs molecular function 73.6 1.27e-13
integrin binding Hs molecular function 71.6 4.39e-13
calcium ion binding Hs molecular function 86.7 1.15e-17
protein binding Hs molecular function 73.6 1.27e-13
extracellular region Hs cellular component 86.7 1.15e-17
fibrinogen complex Hs cellular component 71.6 4.39e-13
proteinaceous extracellular matrix Hs cellular component 86.7 1.15e-17
basement membrane Hs cellular component 86.7 1.15e-17
extracellular space Hs cellular component 71.6 4.39e-13
cytoplasm Hs cellular component 86.7 1.15e-17
endoplasmic reticulum Hs cellular component 71.6 4.39e-13
endoplasmic reticulum lumen Hs cellular component 71.6 4.39e-13
centrosome Hs cellular component 73.6 1.27e-13
plasma membrane Hs cellular component 73.6 1.27e-13
cell cortex Hs cellular component 86.7 1.15e-17
heparin binding Hs molecular function 71.6 4.39e-13
external side of plasma membrane Hs cellular component 71.6 4.39e-13
cell surface Hs cellular component 71.6 4.39e-13
membrane Hs cellular component 73.6 1.27e-13
integral component of membrane Hs cellular component 73.6 1.27e-13
sarcoplasmic reticulum Hs cellular component 71.6 4.39e-13
fibroblast growth factor binding Hs molecular function 71.6 4.39e-13
cell junction Hs cellular component 86.7 1.15e-17
secretory granule Hs cellular component 71.6 4.39e-13
low-density lipoprotein particle binding Hs molecular function 71.6 4.39e-13
extracellular matrix Hs cellular component 86.7 1.15e-17
platelet alpha granule Hs cellular component 71.6 4.39e-13
platelet alpha granule lumen Hs cellular component 71.6 4.39e-13
cleavage furrow Hs cellular component 86.7 1.15e-17
identical protein binding Hs molecular function 71.6 4.39e-13
laminin binding Hs molecular function 71.6 4.39e-13
proteoglycan binding Hs molecular function 71.6 4.39e-13
transforming growth factor beta binding Hs molecular function 71.6 4.39e-13
extracellular matrix binding Hs molecular function 71.6 4.39e-13
fibrinogen binding Hs molecular function 71.6 4.39e-13
collagen V binding Hs molecular function 71.6 4.39e-13
extracellular exosome Hs cellular component 86.7 1.15e-17

GO (InterProScan)

No result

GO Term Analysis Type e-value