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Gene Card

Best human hits

POU4F1; POU4F2; POU4F3

Species

P.mammillata

Unique Gene ID

Phmamm.g00008914

Gene Model ID

Phmamm.CG.MTP2014.S453.g08914

Location

S453:50395..52931

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S453.g08914.01.t
Phmamm.CG.MTP2014.S453.g08914.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

2 results

AHC0AAA33YA19

Plate: Plate_33_A19

AHC0AAA59YN08

Plate: Plate_59_N08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term Analysis Definition
Cro/C1-type_HTH CDD Cro/C1-type helix-turn-helix domain
POU_dom ProSiteProfiles POU-specific domain
Lambda_DNA-bd_dom_sf SUPERFAMILY Lambda repressor-like, DNA-binding domain superfamily
POU PRINTS POU domain
Homeobox_dom SMART Homeobox domain
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom ProSiteProfiles Homeobox domain
POU_dom ProSitePatterns POU-specific domain
POU_dom Pfam POU-specific domain
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox_dom CDD Homeobox domain
POU_dom SMART POU-specific domain
Homeobox_dom Pfam Homeobox domain

GOSlim

21 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
transcription coactivator activity Blast molecular function
transcription corepressor activity Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
plasma membrane Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
membrane Blast cellular component
nuclear speck Blast cellular component
neuron projection Blast cellular component
sequence-specific DNA binding Blast molecular function
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
enzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromatin Hs cellular component 278 1.48e-90
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 301 2.30e-100
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 278 1.48e-90
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 301 2.30e-100
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 301 2.30e-100
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 281 6.86e-92
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 278 1.48e-90
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 301 2.30e-100
DNA binding Hs molecular function 301 2.30e-100
chromatin binding Hs molecular function 281 6.86e-92
single-stranded DNA binding Hs molecular function 278 1.48e-90
transcription factor activity, sequence-specific DNA binding Hs molecular function 301 2.30e-100
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 278 1.48e-90
transcription coactivator activity Hs molecular function 281 6.86e-92
transcription corepressor activity Hs molecular function 281 6.86e-92
nucleus Hs cellular component 301 2.30e-100
nucleoplasm Hs cellular component 301 2.30e-100
cytoplasm Hs cellular component 301 2.30e-100
plasma membrane Hs cellular component 281 6.86e-92
membrane Hs cellular component 281 6.86e-92
nuclear speck Hs cellular component 281 6.86e-92
neuron projection Hs cellular component 278 1.48e-90
sequence-specific DNA binding Hs molecular function 301 2.30e-100
GTPase binding Hs molecular function 278 1.48e-90
promoter-specific chromatin binding Hs molecular function 281 6.86e-92

GO (InterProScan)

4 results

GO Term Analysis Type e-value
DNA binding PRINTS molecular function 2.4E-34
transcription factor activity, sequence-specific DNA binding SMART molecular function 1.8E-48
regulation of transcription, DNA-templated SMART biological process 1.8E-48
sequence-specific DNA binding CDD molecular function 0.0021866

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