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GENE CARD

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Gene Card

Best human hits

CRISPLD1; CRISPLD2; VIT

Species

P.mammillata

Unique Gene ID

Phmamm.g00009016

Gene Model ID

Phmamm.CG.MTP2014.S463.g09016

Location

S463:52371..55499

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S463.g09016.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

1 result

AHC0AAA94YB22

Plate: Plate_94_B22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
LCCL Pfam LCCL domain
LCCL_sf SUPERFAMILY LCCL domain superfamily
LCCL ProSiteProfiles LCCL domain
LCCL SMART LCCL domain
LCCL_sf Gene3D LCCL domain superfamily
Cochlin PANTHER Cochlin

GOSlim

13 results

GO Term Annotation Origin Type
extracellular region Blast cellular component
extracellular exosome Blast cellular component
sensory perception of sound InterProScan biological process
carbohydrate derivative binding Blast molecular function
extracellular region part Blast cellular component
anion binding Blast molecular function
cytoplasmic vesicle Blast cellular component
endomembrane system Blast cellular component
intracellular organelle part Blast cellular component
intracellular organelle lumen Blast cellular component
response to bacterium InterProScan biological process
defense response InterProScan biological process
innate immune response InterProScan biological process

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

9 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
glycosaminoglycan binding Hs molecular function 67.8 1.76e-13
extracellular region Hs cellular component 67.8 1.76e-13
proteinaceous extracellular matrix Hs cellular component 67.8 1.76e-13
interstitial matrix Hs cellular component 50.1 1.75e-07
heparin binding Hs molecular function 67.8 1.76e-13
transport vesicle Hs cellular component 67.8 1.76e-13
secretory granule lumen Hs cellular component 67.8 1.76e-13
extracellular exosome Hs cellular component 67.8 1.76e-13
ficolin-1-rich granule lumen Hs cellular component 67.8 1.76e-13

GO (InterProScan)

4 results

GO Term Analysis Type e-value
sensory perception of sound PANTHER biological process 5.4E-19
extracellular matrix PANTHER cellular component 5.4E-19
defense response to bacterium PANTHER biological process 5.4E-19
positive regulation of innate immune response PANTHER biological process 5.4E-19