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GENE CARD

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Gene Card

Best human hits

CD209; CLEC4M; VIT

Species

P.mammillata

Unique Gene ID

Phmamm.g00009020

Gene Model ID

Phmamm.CG.MTP2014.S463.g09020

Location

S463:79595..82076

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S463.g09020.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

4 results

AHC0AAA2YG11

Plate: Plate_2_G11

AHC0AAA127YK13

Plate: Plate_127_K13

AHC0AAA226YD12

Plate: Plate_226_D12

AHC0AAA249YA02

Plate: Plate_249_A02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
LCCL_sf Gene3D LCCL domain superfamily
C-type_lectin-like/link_sf Gene3D C-type lectin-like/link domain superfamily
C-type_lectin-like SMART C-type lectin-like
LCCL_sf SUPERFAMILY LCCL domain superfamily
LCCL Pfam LCCL domain
C-type_lectin-like ProSiteProfiles C-type lectin-like
LCCL SMART LCCL domain
C-type_lectin-like Pfam C-type lectin-like
LCCL ProSiteProfiles LCCL domain
CTDL_fold SUPERFAMILY C-type lectin fold

GOSlim

16 results

GO Term Annotation Origin Type
protein binding Blast molecular function
extracellular region Blast cellular component
cytoplasm Blast cellular component
plasma membrane Blast cellular component
integral component of plasma membrane Blast cellular component
cell surface Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
metal ion binding Blast molecular function
extracellular exosome Blast cellular component
binding Blast molecular function
small molecule binding Blast molecular function
carbohydrate derivative binding Blast molecular function
extracellular region part Blast cellular component
plasma membrane part Blast cellular component
transmembrane signaling receptor activity Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
virus receptor activity Hs molecular function 59.3 3.74e-10
receptor activity Hs molecular function 58.2 8.33e-10
protein binding Hs molecular function 59.3 3.74e-10
mannose binding Hs molecular function 59.3 3.74e-10
glycosaminoglycan binding Hs molecular function 66.2 1.89e-12
extracellular region Hs cellular component 66.2 1.89e-12
proteinaceous extracellular matrix Hs cellular component 66.2 1.89e-12
interstitial matrix Hs cellular component 66.2 1.89e-12
cytoplasm Hs cellular component 59.3 3.74e-10
plasma membrane Hs cellular component 59.3 3.74e-10
integral component of plasma membrane Hs cellular component 58.2 8.33e-10
external side of plasma membrane Hs cellular component 59.3 3.74e-10
cell surface Hs cellular component 59.3 3.74e-10
membrane Hs cellular component 59.3 3.74e-10
integral component of membrane Hs cellular component 59.3 3.74e-10
carbohydrate binding Hs molecular function 59.3 3.74e-10
ICAM-3 receptor activity Hs molecular function 58.2 8.33e-10
peptide antigen binding Hs molecular function 59.3 3.74e-10
host cell Hs cellular component 59.3 3.74e-10
virion binding Hs molecular function 59.3 3.74e-10
metal ion binding Hs molecular function 59.3 3.74e-10
calcium-dependent protein binding Hs molecular function 58.2 8.33e-10
extracellular exosome Hs cellular component 59.3 3.74e-10

GO (InterProScan)

No result

GO Term Analysis Type e-value