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  1. Gene 'Moocci.CG.ELv1_2.S54...'

Gene Card

Best human hits

DDX39B

Species

P.mammillata

Unique Gene ID

Phmamm.g00009135

Gene Model ID

Phmamm.CG.MTP2014.S473.g09135

Location

S473:17639..20368

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S473.g09135.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

51 results

AHC0AAA11YI05

Plate: Plate_11_I05

AHC0AAA16YD03

Plate: Plate_16_D03

AHC0AAA17YD02

Plate: Plate_17_D02

AHC0AAA17YM09

Plate: Plate_17_M09

AHC0AAA2YI21

Plate: Plate_2_I21

AHC0AAA20YD07

Plate: Plate_20_D07

AHC0AAA20YH06

Plate: Plate_20_H06

AHC0AAA4YF12

Plate: Plate_4_F12

AHC0AAA5YH14

Plate: Plate_5_H14

AHC0AAA32YL17

Plate: Plate_32_L17

AHC0AAA36YF05

Plate: Plate_36_F05

AHC0AAA38YB07

Plate: Plate_38_B07

AHC0AAA45YK16

Plate: Plate_45_K16

AHC0AAA50YG13

Plate: Plate_50_G13

AHC0AAA55YL17

Plate: Plate_55_L17

AHC0AAA59YN15

Plate: Plate_59_N15

AHC0AAA62YF01

Plate: Plate_62_F01

AHC0AAA65YA06

Plate: Plate_65_A06

AHC0AAA69YJ24

Plate: Plate_69_J24

AHC0AAA71YN13

Plate: Plate_71_N13

AHC0AAA74YI08

Plate: Plate_74_I08

AHC0AAA79YK20

Plate: Plate_79_K20

AHC0AAA80YO22

Plate: Plate_80_O22

AHC0AAA121YF23

Plate: Plate_121_F23

AHC0AAA129YA13

Plate: Plate_129_A13

AHC0AAA136YP16

Plate: Plate_136_P16

AHC0AAA140YB08

Plate: Plate_140_B08

AHC0AAA150YL12

Plate: Plate_150_L12

AHC0AAA89YC24

Plate: Plate_89_C24

AHC0AAA96YD06

Plate: Plate_96_D06

AHC0AAA98YC03

Plate: Plate_98_C03

AHC0AAA98YG08

Plate: Plate_98_G08

AHC0AAA167YC11

Plate: Plate_167_C11

AHC0AAA187YA24

Plate: Plate_187_A24

AHC0AAA192YO13

Plate: Plate_192_O13

AHC0AAA207YL13

Plate: Plate_207_L13

AHC0AAA213YC21

Plate: Plate_213_C21

AHC0AAA218YP15

Plate: Plate_218_P15

AHC0AAA222YP24

Plate: Plate_222_P24

AHC0AAA235YD17

Plate: Plate_235_D17

AHC0AAA237YE16

Plate: Plate_237_E16

AHC0AAA258YJ05

Plate: Plate_258_J05

AHC0AAA258YK08

Plate: Plate_258_K08

AHC0AAA261YL14

Plate: Plate_261_L14

AHC0AAA262YI23

Plate: Plate_262_I23

AHC0AAA264YG13

Plate: Plate_264_G13

AHC0AAA265YF20

Plate: Plate_265_F20

AHC0AAA38YB05

Plate: Plate_38_B05

AHC0AAA55YN19

Plate: Plate_55_N19

AHC0AAA98YC01

Plate: Plate_98_C01

AHC0AAA98YG06

Plate: Plate_98_G06

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
Helicase_C SMART Helicase, C-terminal
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase_C Pfam Helicase, C-terminal
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
Helicase_C CDD Helicase, C-terminal

GOSlim

32 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear speck Orthology cellular component
hydrolase activity Orthology molecular function
identical protein binding Orthology molecular function
cellular response to DNA damage stimulus Orthology biological process
regulation of gene expression Orthology biological process
membrane Orthology cellular component
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
animal organ development Orthology biological process
nucleoside-triphosphatase activity Orthology molecular function
transcription from RNA polymerase II promoter Orthology biological process
organic substance transport Orthology biological process
intracellular transport Orthology biological process
intracellular protein transport Orthology biological process
gene expression Orthology biological process
RNA metabolic process Orthology biological process
nuclear lumen Orthology cellular component
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of gene expression Orthology biological process
cell cycle Orthology biological process

GO (Orthology)

41 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleotide binding Hs molecular function
spliceosomal complex assembly Hs biological process
transcription export complex Hs cellular component
mRNA splicing, via spliceosome Hs biological process
liver development Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
U4 snRNP Hs cellular component
U6 snRNP Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
termination of RNA polymerase II transcription Hs biological process
mRNA processing Hs biological process
RNA export from nucleus Hs biological process
mRNA export from nucleus Hs biological process
RNA-dependent ATPase activity Hs molecular function
RNA splicing Hs biological process
RNA secondary structure unwinding Hs biological process
nuclear matrix Hs cellular component
nuclear speck Hs cellular component
hydrolase activity Hs molecular function
ATPase activity Hs molecular function
U6 snRNA binding Hs molecular function
U4 snRNA binding Hs molecular function
mRNA 3'-end processing Hs biological process
positive regulation of DNA-templated transcription, elongation Hs biological process
identical protein binding Hs molecular function
ATP-dependent protein binding Hs molecular function
positive regulation of translation Hs biological process
mRNA transport Hs biological process
negative regulation of DNA damage checkpoint Hs biological process
cellular response to DNA damage stimulus Hs biological process
regulation of gene expression Hs biological process
membrane Hs cellular component

GO (Blast)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 748 0.0
transcription export complex Hs cellular component 748 0.0
nucleic acid binding Hs molecular function 748 0.0
RNA binding Hs molecular function 748 0.0
ATP-dependent RNA helicase activity Hs molecular function 748 0.0
helicase activity Hs molecular function 748 0.0
protein binding Hs molecular function 748 0.0
ATP binding Hs molecular function 748 0.0
nucleus Hs cellular component 748 0.0
nucleoplasm Hs cellular component 748 0.0
spliceosomal complex Hs cellular component 748 0.0
U4 snRNP Hs cellular component 748 0.0
U6 snRNP Hs cellular component 748 0.0
nucleolus Hs cellular component 748 0.0
cytoplasm Hs cellular component 748 0.0
RNA-dependent ATPase activity Hs molecular function 748 0.0
nuclear matrix Hs cellular component 748 0.0
nuclear speck Hs cellular component 748 0.0
hydrolase activity Hs molecular function 748 0.0
ATPase activity Hs molecular function 748 0.0
U6 snRNA binding Hs molecular function 748 0.0
U4 snRNA binding Hs molecular function 748 0.0
identical protein binding Hs molecular function 748 0.0
ATP-dependent protein binding Hs molecular function 748 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 1.6E-38
ATP binding Pfam molecular function 1.6E-38