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GENE CARD

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Gene Card

Best human hits

BHLHA15; NEUROG1; NEUROG3

Species

P.mammillata

Unique Gene ID

Phmamm.g00009173

Gene Model ID

Phmamm.CG.MTP2014.S476.g09173

Location

S476:11471..13832

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S476.g09173.01.t
Phmamm.CG.MTP2014.S476.g09173.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

3 results

AHC0AAA38YK23

Plate: Plate_38_K23

AHC0AAA67YO19

Plate: Plate_67_O19

AHC0AAA38YK21

Plate: Plate_38_K21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
HLH_DNA-bd_sf Gene3D Helix-loop-helix DNA-binding domain superfamily
HLH_DNA-bd_sf SUPERFAMILY Helix-loop-helix DNA-binding domain superfamily
bHLH_dom ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom SMART Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom CDD Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom Pfam Myc-type, basic helix-loop-helix (bHLH) domain

GOSlim

19 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcription factor activity, transcription factor binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
double-stranded DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
transcription coactivator activity Blast molecular function
protein binding Blast molecular function
intracellular Blast cellular component
nucleus Blast cellular component
cytoplasm Blast cellular component
protein homodimerization activity Blast molecular function
neuronal cell body Blast cellular component
protein dimerization activity Blast molecular function
sequence-specific double-stranded DNA binding Blast molecular function
transcription regulatory region DNA binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 96.3 4.07e-23
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 67.0 9.79e-13
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 96.3 4.07e-23
transcription factor activity, transcription factor binding Hs molecular function 65.9 3.37e-12
core promoter binding Hs molecular function 67.0 9.79e-13
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 67.0 9.79e-13
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 67.0 9.79e-13
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 96.3 4.07e-23
DNA binding Hs molecular function 96.3 4.07e-23
chromatin binding Hs molecular function 65.9 3.37e-12
double-stranded DNA binding Hs molecular function 67.0 9.79e-13
transcription factor activity, sequence-specific DNA binding Hs molecular function 67.0 9.79e-13
transcription coactivator activity Hs molecular function 67.0 9.79e-13
protein binding Hs molecular function 67.0 9.79e-13
intracellular Hs cellular component 67.0 9.79e-13
nucleus Hs cellular component 96.3 4.07e-23
cytoplasm Hs cellular component 67.0 9.79e-13
chromatin DNA binding Hs molecular function 67.0 9.79e-13
protein homodimerization activity Hs molecular function 96.3 4.07e-23
neuronal cell body Hs cellular component 65.9 3.37e-12
perikaryon Hs cellular component 65.9 3.37e-12
protein dimerization activity Hs molecular function 96.3 4.07e-23
E-box binding Hs molecular function 65.9 3.37e-12
sequence-specific double-stranded DNA binding Hs molecular function 65.9 3.37e-12

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein dimerization activity Gene3D molecular function 1.2E-20

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