Aniseed - Gene card

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Genoscope Yasuo Villefranche

56 results

AHC0AAA92YJ18

Plate: Plate_92_J18

WashU Genome Browser

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Genomicus Synteny Browser

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No result

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
RRM_dom	SMART	RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	ProSiteProfiles	RNA recognition motif domain
SF3B4_RRM2	CDD	SF3B4, RNA recognition motif 2
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	Pfam	RNA recognition motif domain

GOSlim

20 results

GO Term	Annotation Origin	Type
RNA splicing, via transesterification reactions	Orthology	biological process
mRNA splicing, via spliceosome	Orthology	biological process
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Blast	cellular component
cytosol	Blast	cellular component
focal adhesion	Blast	cellular component
mRNA processing	Orthology	biological process
protein C-terminus binding	Blast	molecular function
RNA splicing	Orthology	biological process
membrane	Blast	cellular component
extracellular exosome	Blast	cellular component
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
positive regulation of gene expression	Orthology	biological process
cytoplasmic part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component

GO (Orthology)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA splicing, via transesterification reactions	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
U12-type spliceosomal complex	Hs	cellular component
mRNA processing	Hs	biological process
RNA splicing	Hs	biological process
positive regulation of mRNA splicing, via spliceosome	Hs	biological process

GO (Blast)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	264	6.41e-87
RNA binding	Hs	molecular function	264	6.41e-87
mRNA binding	Hs	molecular function	82.4	6.57e-18
mRNA 3'-UTR binding	Hs	molecular function	79.3	7.25e-17
protein binding	Hs	molecular function	264	6.41e-87
nucleus	Hs	cellular component	264	6.41e-87
nucleoplasm	Hs	cellular component	264	6.41e-87
spliceosomal complex	Hs	cellular component	264	6.41e-87
U12-type spliceosomal complex	Hs	cellular component	264	6.41e-87
cytoplasm	Hs	cellular component	82.4	6.57e-18
cytosol	Hs	cellular component	82.4	6.57e-18
focal adhesion	Hs	cellular component	79.3	7.25e-17
protein C-terminus binding	Hs	molecular function	79.3	7.25e-17
poly(A) binding	Hs	molecular function	82.4	6.57e-18
poly(U) RNA binding	Hs	molecular function	82.4	6.57e-18
translation activator activity	Hs	molecular function	79.3	7.25e-17
cytoplasmic stress granule	Hs	cellular component	82.4	6.57e-18
membrane	Hs	cellular component	79.3	7.25e-17
intracellular ribonucleoprotein complex	Hs	cellular component	82.4	6.57e-18
cytoplasmic ribonucleoprotein granule	Hs	cellular component	79.3	7.25e-17
extracellular exosome	Hs	cellular component	79.3	7.25e-17
catalytic step 2 spliceosome	Hs	cellular component	79.3	7.25e-17

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	4.79E-27

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