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Gene Card

Best human hits

EDEM1; EDEM2; EDEM3

Species

P.mammillata

Unique Gene ID

Phmamm.g00001937

Gene Model ID

Phmamm.CG.MTP2014.S52.g01937

Location

S52:149339..155953

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S52.g01937.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

12 results

AHC0AAA45YG22

Plate: Plate_45_G22

AHC0AAA53YP13

Plate: Plate_53_P13

AHC0AAA128YO21

Plate: Plate_128_O21

AHC0AAA131YE14

Plate: Plate_131_E14

AHC0AAA137YL19

Plate: Plate_137_L19

AHC0AAA160YD10

Plate: Plate_160_D10

AHC0AAA173YL10

Plate: Plate_173_L10

AHC0AAA197YL09

Plate: Plate_197_L09

AHC0AAA203YO12

Plate: Plate_203_O12

AHC0AAA212YI19

Plate: Plate_212_I19

AHC0AAA223YE22

Plate: Plate_223_E22

AHC0AAA257YJ06

Plate: Plate_257_J06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Seven-hairpin_glycosidases SUPERFAMILY Seven-hairpin glycosidases
6hp_glycosidase-like_sf Gene3D Six-hairpin glycosidase-like superfamily
Glyco_hydro_47 PRINTS Glycoside hydrolase family 47
Glyco_hydro_47 Pfam Glycoside hydrolase family 47

GOSlim

20 results

GO Term Annotation Origin Type
Golgi membrane Orthology cellular component
catalytic activity Orthology molecular function
calcium ion binding Orthology molecular function
protein binding Orthology molecular function
endoplasmic reticulum Orthology cellular component
endoplasmic reticulum lumen Blast cellular component
endoplasmic reticulum membrane Orthology cellular component
metabolic process Orthology biological process
membrane Orthology cellular component
integral component of membrane Orthology cellular component
hydrolase activity Orthology molecular function
metal ion binding Blast molecular function
protein metabolic process Orthology biological process
response to stress Orthology biological process
response to organic substance Orthology biological process
intracellular part Orthology cellular component
cellular response to stress Orthology biological process
proteolysis Orthology biological process
endoplasmic reticulum part Orthology cellular component
cellular protein modification process Orthology biological process

GO (Orthology)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
Golgi membrane Hs cellular component
catalytic activity Hs molecular function
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity Hs molecular function
calcium ion binding Hs molecular function
protein binding Hs molecular function
endoplasmic reticulum Hs cellular component
endoplasmic reticulum membrane Hs cellular component
N-glycan processing Hs biological process
response to unfolded protein Hs biological process
metabolic process Hs biological process
membrane Hs cellular component
integral component of membrane Hs cellular component
aggresome Hs cellular component
hydrolase activity Hs molecular function
hydrolase activity, acting on glycosyl bonds Hs molecular function
integral component of endoplasmic reticulum membrane Hs cellular component
ubiquitin-dependent ERAD pathway Hs biological process
endoplasmic reticulum quality control compartment Hs cellular component
misfolded protein binding Hs molecular function
ubiquitin-dependent glycoprotein ERAD pathway Hs biological process
mannose trimming involved in glycoprotein ERAD pathway Hs biological process

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
Golgi membrane Hs cellular component 642 0.0
catalytic activity Hs molecular function 642 0.0
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity Hs molecular function 642 0.0
calcium ion binding Hs molecular function 642 0.0
protein binding Hs molecular function 642 0.0
endoplasmic reticulum Hs cellular component 642 0.0
endoplasmic reticulum lumen Hs cellular component 343 5.48e-108
endoplasmic reticulum membrane Hs cellular component 642 0.0
membrane Hs cellular component 642 0.0
integral component of membrane Hs cellular component 642 0.0
aggresome Hs cellular component 642 0.0
hydrolase activity Hs molecular function 642 0.0
hydrolase activity, acting on glycosyl bonds Hs molecular function 642 0.0
integral component of endoplasmic reticulum membrane Hs cellular component 642 0.0
endoplasmic reticulum quality control compartment Hs cellular component 642 0.0
metal ion binding Hs molecular function 343 5.48e-108
misfolded protein binding Hs molecular function 642 0.0

GO (InterProScan)

4 results

GO Term Analysis Type e-value
catalytic activity Gene3D molecular function 3.3E-144
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity SUPERFAMILY molecular function 5.76E-133
calcium ion binding SUPERFAMILY molecular function 5.76E-133
membrane SUPERFAMILY cellular component 5.76E-133

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