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  1. Gene 'Boleac.CG.SB_v3.S123...'

Gene Card

Best human hits

FMR1; FXR1; FXR2

Species

P.mammillata

Unique Gene ID

Phmamm.g00010011

Gene Model ID

Phmamm.CG.MTP2014.S553.g10011

Location

S553:93015..104246

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

9 results

AHC0AAA7YE18

Plate: Plate_7_E18

AHC0AAA35YG04

Plate: Plate_35_G04

AHC0AAA73YP03

Plate: Plate_73_P03

AHC0AAA75YP13

Plate: Plate_75_P13

AHC0AAA103YO02

Plate: Plate_103_O02

AHC0AAA113YE08

Plate: Plate_113_E08

AHC0AAA160YD03

Plate: Plate_160_D03

AHC0AAA211YI15

Plate: Plate_211_I15

AHC0AAA237YB08

Plate: Plate_237_B08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
KH_dom_type_1_sf SUPERFAMILY K Homology domain, type 1 superfamily
KH_dom_type_1 Pfam K Homology domain, type 1
KH_dom_type_1_sf Gene3D K Homology domain, type 1 superfamily
KH_dom SMART K Homology domain
Agenet-like_dom ProSiteProfiles Agenet-like domain

GOSlim

70 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
chromatin binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
mRNA processing Orthology biological process
apoptotic process Orthology biological process
cellular response to DNA damage stimulus Orthology biological process
multicellular organism development Orthology biological process
nervous system development Orthology biological process
microtubule binding Orthology molecular function
RNA splicing Orthology biological process
membrane Orthology cellular component
cell junction Orthology cellular component
cell differentiation Orthology biological process
axon Orthology cellular component
identical protein binding Orthology molecular function
protein homodimerization activity Orthology molecular function
cell projection Orthology cellular component
neuron projection Orthology cellular component
synapse Orthology cellular component
postsynaptic membrane Orthology cellular component
protein heterodimerization activity Orthology molecular function
perinuclear region of cytoplasm Orthology cellular component
extracellular exosome Orthology cellular component
postsynapse Orthology cellular component
mRNA splicing, via spliceosome Orthology biological process
regulation of gene expression Orthology biological process
intracellular organelle part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
organelle organization Orthology biological process
membrane organization Orthology biological process
macromolecular complex Orthology cellular component
intracellular part Orthology cellular component
animal organ development Orthology biological process
cytoplasmic part Orthology cellular component
organelle Orthology cellular component
neuron part Orthology cellular component
nuclear body Orthology cellular component
negative regulation of gene expression Orthology biological process
plasma membrane part Orthology cellular component
ribosome Orthology cellular component
cell projection part Orthology cellular component
cellular process Orthology biological process
plasma membrane region Orthology cellular component
cytoskeletal part Orthology cellular component
protein phosphorylation Orthology biological process
synaptic membrane Orthology cellular component
macromolecular complex binding Orthology molecular function
organelle part Orthology cellular component
neuronal cell body Orthology cellular component
mRNA catabolic process Orthology biological process
synapse part Orthology cellular component
positive regulation of gene expression Orthology biological process
translational initiation Orthology biological process
regulation of signaling Orthology biological process
chemical synaptic transmission Orthology biological process
organic substance transport Orthology biological process
cell projection assembly Orthology biological process
neuron projection development Orthology biological process
transmembrane transport Orthology biological process
metal ion transport Orthology biological process
regulation of molecular function Orthology biological process
proteolysis Orthology biological process
intracellular transport Orthology biological process

GO (Orthology)

104 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
regulation of alternative mRNA splicing, via spliceosome Hs biological process
chromosome, centromeric region Hs cellular component
positive regulation of receptor internalization Hs biological process
G-quadruplex RNA binding Hs molecular function
nucleic acid binding Hs molecular function
chromatin binding Hs molecular function
RNA binding Hs molecular function
mRNA binding Hs molecular function
mRNA 3'-UTR binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
chromosome Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
polysome Hs cellular component
mRNA cap binding complex Hs cellular component
plasma membrane Hs cellular component
mRNA processing Hs biological process
regulation of translation Hs biological process
apoptotic process Hs biological process
cellular response to DNA damage stimulus Hs biological process
multicellular organism development Hs biological process
nervous system development Hs biological process
muscle organ development Hs biological process
microtubule binding Hs molecular function
poly(U) RNA binding Hs molecular function
RNA splicing Hs biological process
chromocenter Hs cellular component
cytoplasmic stress granule Hs cellular component
postsynaptic density Hs cellular component
Cajal body Hs cellular component
membrane Hs cellular component
viral process Hs biological process
negative regulation of translation Hs biological process
viral replication complex Hs cellular component
extrinsic component of plasma membrane Hs cellular component
cytosolic large ribosomal subunit Hs cellular component
cell junction Hs cellular component
cell differentiation Hs biological process
translation repressor activity Hs molecular function
axon Hs cellular component
dendrite Hs cellular component
growth cone Hs cellular component
intracellular ribonucleoprotein complex Hs cellular component
gene silencing by RNA Hs biological process
translation initiation factor binding Hs molecular function
filopodium tip Hs cellular component
SMN complex Hs cellular component
positive regulation of histone phosphorylation Hs biological process
RNA strand annealing activity Hs molecular function
poly(G) binding Hs molecular function
cellular response to UV Hs biological process
methylated histone binding Hs molecular function
siRNA binding Hs molecular function
miRNA binding Hs molecular function
RNA stem-loop binding Hs molecular function
ribonucleoprotein granule Hs cellular component
cytoplasmic ribonucleoprotein granule Hs cellular component
presynaptic membrane Hs cellular component
polysomal ribosome Hs cellular component
identical protein binding Hs molecular function
protein homodimerization activity Hs molecular function
cell projection Hs cellular component
neuron projection Hs cellular component
ribosome binding Hs molecular function
costamere Hs cellular component
dendritic spine Hs cellular component
perikaryon Hs cellular component
regulation of mRNA stability Hs biological process
axon terminus Hs cellular component
ion channel binding Hs molecular function
synapse Hs cellular component
postsynaptic membrane Hs cellular component
positive regulation of translation Hs biological process
negative regulation of translational initiation Hs biological process
regulation of neurotransmitter secretion Hs biological process
protein heterodimerization activity Hs molecular function
mRNA 5'-UTR binding Hs molecular function
perinuclear region of cytoplasm Hs cellular component
mRNA transport Hs biological process
regulation of filopodium assembly Hs biological process
positive regulation of filopodium assembly Hs biological process
regulation of gene silencing by miRNA Hs biological process
positive regulation of dendritic spine development Hs biological process
extracellular exosome Hs cellular component
dynein complex binding Hs molecular function
neuronal ribonucleoprotein granule Hs cellular component
glial cell projection Hs cellular component
cellular response to virus Hs biological process
presynapse Hs cellular component
postsynapse Hs cellular component
negative regulation of voltage-gated calcium channel activity Hs biological process
positive regulation of proteasomal protein catabolic process Hs biological process
dendritic filopodium Hs cellular component
messenger ribonucleoprotein complex Hs cellular component
growth cone filopodium Hs cellular component
sequence-specific mRNA binding Hs molecular function
ribonucleoprotein complex Hs cellular component
negative regulation of synaptic vesicle exocytosis Hs biological process
positive regulation of gene silencing by miRNA Hs biological process
negative regulation of cytoplasmic translation Hs biological process
positive regulation of response to DNA damage stimulus Hs biological process

GO (Blast)

72 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
chromosome, centromeric region Hs cellular component 344 1.04e-109
G-quadruplex RNA binding Hs molecular function 406 8.28e-134
nucleic acid binding Hs molecular function 406 8.28e-134
chromatin binding Hs molecular function 344 1.04e-109
RNA binding Hs molecular function 406 8.28e-134
mRNA binding Hs molecular function 406 8.28e-134
mRNA 3'-UTR binding Hs molecular function 406 8.28e-134
protein binding Hs molecular function 406 8.28e-134
nucleus Hs cellular component 406 8.28e-134
nucleoplasm Hs cellular component 344 1.04e-109
chromosome Hs cellular component 344 1.04e-109
nucleolus Hs cellular component 406 8.28e-134
cytoplasm Hs cellular component 406 8.28e-134
cytosol Hs cellular component 406 8.28e-134
polysome Hs cellular component 406 8.28e-134
mRNA cap binding complex Hs cellular component 344 1.04e-109
plasma membrane Hs cellular component 344 1.04e-109
microtubule binding Hs molecular function 344 1.04e-109
poly(U) RNA binding Hs molecular function 344 1.04e-109
chromocenter Hs cellular component 344 1.04e-109
cytoplasmic stress granule Hs cellular component 344 1.04e-109
postsynaptic density Hs cellular component 344 1.04e-109
Cajal body Hs cellular component 344 1.04e-109
membrane Hs cellular component 406 8.28e-134
viral replication complex Hs cellular component 344 1.04e-109
extrinsic component of plasma membrane Hs cellular component 344 1.04e-109
cytosolic large ribosomal subunit Hs cellular component 404 2.94e-132
cell junction Hs cellular component 344 1.04e-109
translation repressor activity Hs molecular function 344 1.04e-109
axon Hs cellular component 406 8.28e-134
dendrite Hs cellular component 406 8.28e-134
growth cone Hs cellular component 344 1.04e-109
intracellular ribonucleoprotein complex Hs cellular component 344 1.04e-109
translation initiation factor binding Hs molecular function 344 1.04e-109
filopodium tip Hs cellular component 344 1.04e-109
SMN complex Hs cellular component 344 1.04e-109
RNA strand annealing activity Hs molecular function 406 8.28e-134
poly(G) binding Hs molecular function 344 1.04e-109
methylated histone binding Hs molecular function 344 1.04e-109
siRNA binding Hs molecular function 344 1.04e-109
miRNA binding Hs molecular function 344 1.04e-109
RNA stem-loop binding Hs molecular function 344 1.04e-109
ribonucleoprotein granule Hs cellular component 406 8.28e-134
cytoplasmic ribonucleoprotein granule Hs cellular component 344 1.04e-109
presynaptic membrane Hs cellular component 344 1.04e-109
polysomal ribosome Hs cellular component 344 1.04e-109
identical protein binding Hs molecular function 404 2.94e-132
protein homodimerization activity Hs molecular function 406 8.28e-134
cell projection Hs cellular component 344 1.04e-109
neuron projection Hs cellular component 344 1.04e-109
ribosome binding Hs molecular function 344 1.04e-109
costamere Hs cellular component 406 8.28e-134
dendritic spine Hs cellular component 406 8.28e-134
perikaryon Hs cellular component 344 1.04e-109
axon terminus Hs cellular component 344 1.04e-109
ion channel binding Hs molecular function 344 1.04e-109
synapse Hs cellular component 344 1.04e-109
postsynaptic membrane Hs cellular component 344 1.04e-109
protein heterodimerization activity Hs molecular function 406 8.28e-134
mRNA 5'-UTR binding Hs molecular function 344 1.04e-109
perinuclear region of cytoplasm Hs cellular component 406 8.28e-134
extracellular exosome Hs cellular component 404 2.94e-132
dynein complex binding Hs molecular function 344 1.04e-109
neuronal ribonucleoprotein granule Hs cellular component 344 1.04e-109
glial cell projection Hs cellular component 344 1.04e-109
presynapse Hs cellular component 344 1.04e-109
postsynapse Hs cellular component 344 1.04e-109
dendritic filopodium Hs cellular component 344 1.04e-109
messenger ribonucleoprotein complex Hs cellular component 344 1.04e-109
growth cone filopodium Hs cellular component 344 1.04e-109
sequence-specific mRNA binding Hs molecular function 344 1.04e-109
ribonucleoprotein complex Hs cellular component 344 1.04e-109

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 0.004
RNA binding Gene3D molecular function 1.4E-23
mRNA binding PANTHER molecular function 3.9E-190