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GENE CARD

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Gene Card

Best human hits

LIN28A; LIN28B; YBX2

Species

P.mammillata

Unique Gene ID

Phmamm.g00010069

Gene Model ID

Phmamm.CG.MTP2014.S560.g10069

Location

S560:25001..27758

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

23 results

AHC0AAA10YI23

Plate: Plate_10_I23

AHC0AAA5YP15

Plate: Plate_5_P15

AHC0AAA35YO17

Plate: Plate_35_O17

AHC0AAA53YN21

Plate: Plate_53_N21

AHC0AAA57YJ18

Plate: Plate_57_J18

AHC0AAA60YF06

Plate: Plate_60_F06

AHC0AAA72YN22

Plate: Plate_72_N22

AHC0AAA120YC18

Plate: Plate_120_C18

AHC0AAA141YG02

Plate: Plate_141_G02

AHC0AAA146YN17

Plate: Plate_146_N17

AHC0AAA167YA23

Plate: Plate_167_A23

AHC0AAA176YO21

Plate: Plate_176_O21

AHC0AAA179YF24

Plate: Plate_179_F24

AHC0AAA184YH20

Plate: Plate_184_H20

AHC0AAA200YE19

Plate: Plate_200_E19

AHC0AAA202YH06

Plate: Plate_202_H06

AHC0AAA202YP10

Plate: Plate_202_P10

AHC0AAA208YM21

Plate: Plate_208_M21

AHC0AAA223YL21

Plate: Plate_223_L21

AHC0AAA231YO05

Plate: Plate_231_O05

AHC0AAA242YE03

Plate: Plate_242_E03

AHC0AAA252YH01

Plate: Plate_252_H01

AHC0AAA257YL22

Plate: Plate_257_L22

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Znf_CCHC ProSiteProfiles Zinc finger, CCHC-type
CSP_DNA-bd Pfam Cold-shock protein, DNA-binding
NA-bd_OB-fold SUPERFAMILY Nucleic acid-binding, OB-fold
CSP_DNA-bd PRINTS Cold-shock protein, DNA-binding
Znf_CCHC_sf SUPERFAMILY Zinc finger, CCHC-type superfamily
Znf_CCHC Pfam Zinc finger, CCHC-type
CSP_DNA-bd CDD Cold-shock protein, DNA-binding
CSD SMART Cold shock domain
Znf_CCHC SMART Zinc finger, CCHC-type

GOSlim

31 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
endoplasmic reticulum Orthology cellular component
cytosol Orthology cellular component
regulation of transcription, DNA-templated Orthology biological process
zinc ion binding Orthology molecular function
metal ion binding Orthology molecular function
cytoplasmic part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
macromolecular complex Orthology cellular component
gamete generation Orthology biological process
cell development Orthology biological process
RNA metabolic process Orthology biological process
RNA catabolic process Orthology biological process
negative regulation of gene expression Orthology biological process
developmental process Orthology biological process
cellular process Orthology biological process
RNA processing Orthology biological process
intracellular signal transduction Orthology biological process
positive regulation of signal transduction Orthology biological process
neuron differentiation Orthology biological process
positive regulation of gene expression Orthology biological process
cell differentiation Orthology biological process
cell Orthology cellular component
cellular response to organic substance Orthology biological process
macromolecular complex binding Orthology molecular function

GO (Orthology)

40 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
P-body Hs cellular component
G-quadruplex RNA binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
RNA binding Hs molecular function
mRNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
endoplasmic reticulum Hs cellular component
rough endoplasmic reticulum Hs cellular component
cytosol Hs cellular component
polysome Hs cellular component
regulation of transcription, DNA-templated Hs biological process
germ cell development Hs biological process
zinc ion binding Hs molecular function
cytoplasmic stress granule Hs cellular component
miRNA metabolic process Hs biological process
miRNA catabolic process Hs biological process
negative regulation of translation Hs biological process
stem cell population maintenance Hs biological process
intracellular ribonucleoprotein complex Hs cellular component
gene silencing by RNA Hs biological process
pre-miRNA processing Hs biological process
RNA 3'-end processing Hs biological process
translation initiation factor binding Hs molecular function
positive regulation of TOR signaling Hs biological process
somatic stem cell population maintenance Hs biological process
miRNA binding Hs molecular function
positive regulation of neuron differentiation Hs biological process
positive regulation of translation Hs biological process
metal ion binding Hs molecular function
stem cell differentiation Hs biological process
positive regulation of protein kinase B signaling Hs biological process
regulation of gene silencing by miRNA Hs biological process
cellular response to glucose stimulus Hs biological process
polysome binding Hs molecular function
sequence-specific mRNA binding Hs molecular function
positive regulation of cytoplasmic translation Hs biological process

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
P-body Hs cellular component 149 1.60e-45
fibrillar center Hs cellular component 62.4 9.32e-12
G-quadruplex RNA binding Hs molecular function 149 1.60e-45
nucleic acid binding Hs molecular function 151 5.18e-46
DNA binding Hs molecular function 151 5.18e-46
RNA binding Hs molecular function 151 5.18e-46
mRNA binding Hs molecular function 149 1.60e-45
protein binding Hs molecular function 151 5.18e-46
nucleus Hs cellular component 151 5.18e-46
nucleolus Hs cellular component 151 5.18e-46
cytoplasm Hs cellular component 151 5.18e-46
endoplasmic reticulum Hs cellular component 149 1.60e-45
rough endoplasmic reticulum Hs cellular component 149 1.60e-45
cytosol Hs cellular component 151 5.18e-46
polysome Hs cellular component 149 1.60e-45
zinc ion binding Hs molecular function 151 5.18e-46
cytoplasmic stress granule Hs cellular component 149 1.60e-45
intracellular ribonucleoprotein complex Hs cellular component 149 1.60e-45
translation initiation factor binding Hs molecular function 149 1.60e-45
miRNA binding Hs molecular function 149 1.60e-45
metal ion binding Hs molecular function 151 5.18e-46
polysome binding Hs molecular function 149 1.60e-45
sequence-specific mRNA binding Hs molecular function 149 1.60e-45

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 3.14E-12
DNA binding CDD molecular function 5.26231E-18
regulation of transcription, DNA-templated CDD biological process 5.26231E-18
zinc ion binding SUPERFAMILY molecular function 3.14E-12