Gene Card
Best human hits
LIN28A; LIN28B; YBX2
Species
Unique Gene ID
Phmamm.g00010069
Gene Model ID
Phmamm.CG.MTP2014.S560.g10069
Location
S560:25001..27758
Transcript Models and Sequences
Phmamm.CG.MTP2014.S560.g10069.01.t
Phmamm.CG.MTP2014.S560.g10069.02.t
AHC0AAA10YI23
Plate: Plate_10_I23
AHC0AAA5YP15
Plate: Plate_5_P15
AHC0AAA35YO17
Plate: Plate_35_O17
AHC0AAA53YN21
Plate: Plate_53_N21
AHC0AAA57YJ18
Plate: Plate_57_J18
AHC0AAA60YF06
Plate: Plate_60_F06
AHC0AAA72YN22
Plate: Plate_72_N22
AHC0AAA120YC18
Plate: Plate_120_C18
AHC0AAA141YG02
Plate: Plate_141_G02
AHC0AAA146YN17
Plate: Plate_146_N17
AHC0AAA167YA23
Plate: Plate_167_A23
AHC0AAA176YO21
Plate: Plate_176_O21
AHC0AAA179YF24
Plate: Plate_179_F24
AHC0AAA184YH20
Plate: Plate_184_H20
AHC0AAA200YE19
Plate: Plate_200_E19
AHC0AAA202YH06
Plate: Plate_202_H06
AHC0AAA202YP10
Plate: Plate_202_P10
AHC0AAA208YM21
Plate: Plate_208_M21
AHC0AAA223YL21
Plate: Plate_223_L21
AHC0AAA231YO05
Plate: Plate_231_O05
AHC0AAA242YE03
Plate: Plate_242_E03
AHC0AAA252YH01
Plate: Plate_252_H01
AHC0AAA257YL22
Plate: Plate_257_L22
n/a
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IPR Term | Analysis | Definition |
---|---|---|
Znf_CCHC | ProSiteProfiles | Zinc finger, CCHC-type |
CSP_DNA-bd | Pfam | Cold-shock protein, DNA-binding |
NA-bd_OB-fold | SUPERFAMILY | Nucleic acid-binding, OB-fold |
CSP_DNA-bd | PRINTS | Cold-shock protein, DNA-binding |
Znf_CCHC_sf | SUPERFAMILY | Zinc finger, CCHC-type superfamily |
Znf_CCHC | Pfam | Zinc finger, CCHC-type |
CSP_DNA-bd | CDD | Cold-shock protein, DNA-binding |
CSD | SMART | Cold shock domain |
Znf_CCHC | SMART | Zinc finger, CCHC-type |
GO Term | Annotation Origin | Type |
---|---|---|
nucleic acid binding | Orthology | molecular function |
DNA binding | Orthology | molecular function |
RNA binding | Orthology | molecular function |
protein binding | Orthology | molecular function |
nucleus | Orthology | cellular component |
nucleolus | Orthology | cellular component |
cytoplasm | Orthology | cellular component |
endoplasmic reticulum | Orthology | cellular component |
cytosol | Orthology | cellular component |
regulation of transcription, DNA-templated | Orthology | biological process |
zinc ion binding | Orthology | molecular function |
metal ion binding | Orthology | molecular function |
cytoplasmic part | Orthology | cellular component |
intracellular non-membrane-bounded organelle | Orthology | cellular component |
macromolecular complex | Orthology | cellular component |
gamete generation | Orthology | biological process |
cell development | Orthology | biological process |
RNA metabolic process | Orthology | biological process |
RNA catabolic process | Orthology | biological process |
negative regulation of gene expression | Orthology | biological process |
developmental process | Orthology | biological process |
cellular process | Orthology | biological process |
RNA processing | Orthology | biological process |
intracellular signal transduction | Orthology | biological process |
positive regulation of signal transduction | Orthology | biological process |
neuron differentiation | Orthology | biological process |
positive regulation of gene expression | Orthology | biological process |
cell differentiation | Orthology | biological process |
cell | Orthology | cellular component |
cellular response to organic substance | Orthology | biological process |
macromolecular complex binding | Orthology | molecular function |
GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
---|---|---|
P-body | Hs | cellular component |
G-quadruplex RNA binding | Hs | molecular function |
nucleic acid binding | Hs | molecular function |
DNA binding | Hs | molecular function |
RNA binding | Hs | molecular function |
mRNA binding | Hs | molecular function |
protein binding | Hs | molecular function |
nucleus | Hs | cellular component |
nucleolus | Hs | cellular component |
cytoplasm | Hs | cellular component |
endoplasmic reticulum | Hs | cellular component |
rough endoplasmic reticulum | Hs | cellular component |
cytosol | Hs | cellular component |
polysome | Hs | cellular component |
regulation of transcription, DNA-templated | Hs | biological process |
germ cell development | Hs | biological process |
zinc ion binding | Hs | molecular function |
cytoplasmic stress granule | Hs | cellular component |
miRNA metabolic process | Hs | biological process |
miRNA catabolic process | Hs | biological process |
negative regulation of translation | Hs | biological process |
stem cell population maintenance | Hs | biological process |
intracellular ribonucleoprotein complex | Hs | cellular component |
gene silencing by RNA | Hs | biological process |
pre-miRNA processing | Hs | biological process |
RNA 3'-end processing | Hs | biological process |
translation initiation factor binding | Hs | molecular function |
positive regulation of TOR signaling | Hs | biological process |
somatic stem cell population maintenance | Hs | biological process |
miRNA binding | Hs | molecular function |
positive regulation of neuron differentiation | Hs | biological process |
positive regulation of translation | Hs | biological process |
metal ion binding | Hs | molecular function |
stem cell differentiation | Hs | biological process |
positive regulation of protein kinase B signaling | Hs | biological process |
regulation of gene silencing by miRNA | Hs | biological process |
cellular response to glucose stimulus | Hs | biological process |
polysome binding | Hs | molecular function |
sequence-specific mRNA binding | Hs | molecular function |
positive regulation of cytoplasmic translation | Hs | biological process |
GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
---|---|---|---|---|
P-body | Hs | cellular component | 149 | 1.60e-45 |
fibrillar center | Hs | cellular component | 62.4 | 9.32e-12 |
G-quadruplex RNA binding | Hs | molecular function | 149 | 1.60e-45 |
nucleic acid binding | Hs | molecular function | 151 | 5.18e-46 |
DNA binding | Hs | molecular function | 151 | 5.18e-46 |
RNA binding | Hs | molecular function | 151 | 5.18e-46 |
mRNA binding | Hs | molecular function | 149 | 1.60e-45 |
protein binding | Hs | molecular function | 151 | 5.18e-46 |
nucleus | Hs | cellular component | 151 | 5.18e-46 |
nucleolus | Hs | cellular component | 151 | 5.18e-46 |
cytoplasm | Hs | cellular component | 151 | 5.18e-46 |
endoplasmic reticulum | Hs | cellular component | 149 | 1.60e-45 |
rough endoplasmic reticulum | Hs | cellular component | 149 | 1.60e-45 |
cytosol | Hs | cellular component | 151 | 5.18e-46 |
polysome | Hs | cellular component | 149 | 1.60e-45 |
zinc ion binding | Hs | molecular function | 151 | 5.18e-46 |
cytoplasmic stress granule | Hs | cellular component | 149 | 1.60e-45 |
intracellular ribonucleoprotein complex | Hs | cellular component | 149 | 1.60e-45 |
translation initiation factor binding | Hs | molecular function | 149 | 1.60e-45 |
miRNA binding | Hs | molecular function | 149 | 1.60e-45 |
metal ion binding | Hs | molecular function | 151 | 5.18e-46 |
polysome binding | Hs | molecular function | 149 | 1.60e-45 |
sequence-specific mRNA binding | Hs | molecular function | 149 | 1.60e-45 |
GO Term | Analysis | Type | e-value |
---|---|---|---|
nucleic acid binding | SUPERFAMILY | molecular function | 3.14E-12 |
DNA binding | CDD | molecular function | 5.26231E-18 |
regulation of transcription, DNA-templated | CDD | biological process | 5.26231E-18 |
zinc ion binding | SUPERFAMILY | molecular function | 3.14E-12 |