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GENE CARD

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Gene Card

Best human hits

LARP6; LARP7; SSB

Species

P.mammillata

Unique Gene ID

Phmamm.g00002167

Gene Model ID

Phmamm.CG.MTP2014.S60.g02167

Location

S60:117902..122589

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S60.g02167.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

13 results

AHC0AAA25YC21

Plate: Plate_25_C21

AHC0AAA49YM12

Plate: Plate_49_M12

AHC0AAA70YN23

Plate: Plate_70_N23

AHC0AAA77YH08

Plate: Plate_77_H08

AHC0AAA127YC17

Plate: Plate_127_C17

AHC0AAA93YB07

Plate: Plate_93_B07

AHC0AAA200YI08

Plate: Plate_200_I08

AHC0AAA209YF05

Plate: Plate_209_F05

AHC0AAA218YG16

Plate: Plate_218_G16

AHC0AAA219YK03

Plate: Plate_219_K03

AHC0AAA237YG14

Plate: Plate_237_G14

AHC0AAA252YM24

Plate: Plate_252_M24

AHC0AAA267YA24

Plate: Plate_267_A24

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
La_HTH ProSiteProfiles La-type HTH domain
La_HTH Pfam La-type HTH domain
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
La_HTH SMART La-type HTH domain
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily

GOSlim

11 results

GO Term Annotation Origin Type
nucleic acid binding Blast molecular function
RNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
macromolecular complex Blast cellular component
cytoskeletal protein binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
tRNA binding Hs molecular function 53.5 1.99e-07
nuclear chromosome, telomeric region Hs cellular component 53.5 1.99e-07
nucleic acid binding Hs molecular function 110 8.28e-26
RNA binding Hs molecular function 110 8.28e-26
mRNA binding Hs molecular function 53.5 1.99e-07
protein binding Hs molecular function 110 8.28e-26
nucleus Hs cellular component 110 8.28e-26
nucleoplasm Hs cellular component 71.2 5.99e-13
cytoplasm Hs cellular component 110 8.28e-26
cytosol Hs cellular component 71.2 5.99e-13
polysome Hs cellular component 110 8.28e-26
poly(U) RNA binding Hs molecular function 53.5 1.99e-07
myosin binding Hs molecular function 110 8.28e-26
intracellular ribonucleoprotein complex Hs cellular component 110 8.28e-26
RNA stem-loop binding Hs molecular function 110 8.28e-26
mRNA 5'-UTR binding Hs molecular function 110 8.28e-26
sequence-specific mRNA binding Hs molecular function 110 8.28e-26

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 5.43E-5