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GENE CARD

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Gene Card

Best human hits

DHX16; DHX8

Species

P.mammillata

Unique Gene ID

Phmamm.g00002387

Gene Model ID

Phmamm.CG.MTP2014.S67.g02387

Location

S67:79268..82844

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S67.g02387.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

12 results

AHC0AAA30YI17

Plate: Plate_30_I17

AHC0AAA50YP21

Plate: Plate_50_P21

AHC0AAA61YK22

Plate: Plate_61_K22

AHC0AAA105YJ08

Plate: Plate_105_J08

AHC0AAA119YE11

Plate: Plate_119_E11

AHC0AAA119YN21

Plate: Plate_119_N21

AHC0AAA132YI12

Plate: Plate_132_I12

AHC0AAA82YE20

Plate: Plate_82_E20

AHC0AAA94YP22

Plate: Plate_94_P22

AHC0AAA167YO17

Plate: Plate_167_O17

AHC0AAA216YA22

Plate: Plate_216_A22

AHC0AAA263YK08

Plate: Plate_263_K08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

16 results

IPR Term Analysis Definition
S1_domain ProSiteProfiles S1 domain
Helicase_C Pfam Helicase, C-terminal
S1_dom SMART RNA-binding domain, S1
S1_domain Pfam S1 domain
Helicase_C CDD Helicase, C-terminal
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
DNA/RNA_helicase_DEAH_CS ProSitePatterns DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
DUF1605 Pfam Domain of unknown function DUF1605
NA-bd_OB-fold SUPERFAMILY Nucleic acid-binding, OB-fold
Helicase-assoc_dom SMART Helicase-associated domain
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase-assoc_dom Pfam Helicase-associated domain
Helicase_C SMART Helicase, C-terminal

GOSlim

18 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
RNA processing Orthology biological process
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear body Orthology cellular component
hydrolase activity Orthology molecular function
identical protein binding Orthology molecular function
nucleoside-triphosphatase activity Orthology molecular function
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component

GO (Orthology)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleotide binding Hs molecular function
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
cytoplasm Hs cellular component
RNA processing Hs biological process
mRNA processing Hs biological process
RNA splicing Hs biological process
nuclear body Hs cellular component
hydrolase activity Hs molecular function
identical protein binding Hs molecular function
U2-type catalytic step 2 spliceosome Hs cellular component
catalytic step 2 spliceosome Hs cellular component

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 1644 0.0
nucleic acid binding Hs molecular function 1644 0.0
RNA binding Hs molecular function 1644 0.0
RNA helicase activity Hs molecular function 801 0.0
ATP-dependent RNA helicase activity Hs molecular function 1644 0.0
helicase activity Hs molecular function 1644 0.0
protein binding Hs molecular function 1644 0.0
ATP binding Hs molecular function 1644 0.0
nucleus Hs cellular component 1644 0.0
nucleoplasm Hs cellular component 1644 0.0
spliceosomal complex Hs cellular component 1644 0.0
cytoplasm Hs cellular component 1644 0.0
nuclear body Hs cellular component 1644 0.0
hydrolase activity Hs molecular function 1644 0.0
ATPase activity Hs molecular function 801 0.0
identical protein binding Hs molecular function 1644 0.0
U2-type catalytic step 2 spliceosome Hs cellular component 1644 0.0
catalytic step 2 spliceosome Hs cellular component 1644 0.0

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 2.1E-11
helicase activity SMART molecular function 1.7E-38
ATP binding Pfam molecular function 3.7E-7