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GENE CARD

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  1. Gene 'Harore.CG.MTP2014.S6...'

Gene Card

Best human hits

LARP6; LARP7; SSB

Species

P.mammillata

Unique Gene ID

Phmamm.g00002391

Gene Model ID

Phmamm.CG.MTP2014.S67.g02391

Location

S67:121192..133646

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

20 results

AHC0AAA12YJ24

Plate: Plate_12_J24

AHC0AAA16YA23

Plate: Plate_16_A23

AHC0AAA18YM12

Plate: Plate_18_M12

AHC0AAA20YM14

Plate: Plate_20_M14

AHC0AAA33YI18

Plate: Plate_33_I18

AHC0AAA33YJ10

Plate: Plate_33_J10

AHC0AAA50YE04

Plate: Plate_50_E04

AHC0AAA73YO20

Plate: Plate_73_O20

AHC0AAA106YK16

Plate: Plate_106_K16

AHC0AAA121YH02

Plate: Plate_121_H02

AHC0AAA82YK04

Plate: Plate_82_K04

AHC0AAA106YK14

Plate: Plate_106_K14

AHC0AAA180YD14

Plate: Plate_180_D14

AHC0AAA194YC09

Plate: Plate_194_C09

AHC0AAA204YD17

Plate: Plate_204_D17

AHC0AAA219YN09

Plate: Plate_219_N09

AHC0AAA236YD21

Plate: Plate_236_D21

AHC0AAA241YL05

Plate: Plate_241_L05

AHC0AAA242YI23

Plate: Plate_242_I23

AHC0AAA246YA15

Plate: Plate_246_A15

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
La_HTH Pfam La-type HTH domain
La_HTH SMART La-type HTH domain
La_HTH ProSiteProfiles La-type HTH domain
Lupus_La PRINTS Lupus La protein

GOSlim

12 results

GO Term Annotation Origin Type
nucleic acid binding Blast molecular function
RNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
RNA processing InterProScan biological process
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
macromolecular complex Blast cellular component
cytoskeletal protein binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
tRNA binding Hs molecular function 56.2 2.17e-08
nuclear chromosome, telomeric region Hs cellular component 56.2 2.17e-08
nucleic acid binding Hs molecular function 199 7.63e-58
RNA binding Hs molecular function 199 7.63e-58
mRNA binding Hs molecular function 56.2 2.17e-08
protein binding Hs molecular function 199 7.63e-58
nucleus Hs cellular component 199 7.63e-58
nucleoplasm Hs cellular component 68.2 5.23e-12
cytoplasm Hs cellular component 199 7.63e-58
cytosol Hs cellular component 68.2 5.23e-12
polysome Hs cellular component 199 7.63e-58
poly(U) RNA binding Hs molecular function 56.2 2.17e-08
myosin binding Hs molecular function 199 7.63e-58
intracellular ribonucleoprotein complex Hs cellular component 199 7.63e-58
RNA stem-loop binding Hs molecular function 199 7.63e-58
mRNA 5'-UTR binding Hs molecular function 199 7.63e-58
sequence-specific mRNA binding Hs molecular function 199 7.63e-58

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 8.93E-5
RNA binding PRINTS molecular function 9.0E-7
nucleus PRINTS cellular component 9.0E-7
RNA processing PRINTS biological process 9.0E-7