Gene Card
Best human hits
LARP6; LARP7; SSB
Species
Unique Gene ID
Phmamm.g00002391
Gene Model ID
Phmamm.CG.MTP2014.S67.g02391
Location
S67:121192..133646
Transcript Models and Sequences
Phmamm.CG.MTP2014.S67.g02391.01.t
Phmamm.CG.MTP2014.S67.g02391.02.t
AHC0AAA12YJ24
Plate: Plate_12_J24
AHC0AAA16YA23
Plate: Plate_16_A23
AHC0AAA18YM12
Plate: Plate_18_M12
AHC0AAA20YM14
Plate: Plate_20_M14
AHC0AAA33YI18
Plate: Plate_33_I18
AHC0AAA33YJ10
Plate: Plate_33_J10
AHC0AAA50YE04
Plate: Plate_50_E04
AHC0AAA73YO20
Plate: Plate_73_O20
AHC0AAA106YK16
Plate: Plate_106_K16
AHC0AAA121YH02
Plate: Plate_121_H02
AHC0AAA82YK04
Plate: Plate_82_K04
AHC0AAA106YK14
Plate: Plate_106_K14
AHC0AAA180YD14
Plate: Plate_180_D14
AHC0AAA194YC09
Plate: Plate_194_C09
AHC0AAA204YD17
Plate: Plate_204_D17
AHC0AAA219YN09
Plate: Plate_219_N09
AHC0AAA236YD21
Plate: Plate_236_D21
AHC0AAA241YL05
Plate: Plate_241_L05
AHC0AAA242YI23
Plate: Plate_242_I23
AHC0AAA246YA15
Plate: Plate_246_A15
n/a
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IPR Term | Analysis | Definition |
---|---|---|
Nucleotide-bd_a/b_plait_sf | Gene3D | Nucleotide-binding alpha-beta plait domain superfamily |
RBD_domain_sf | SUPERFAMILY | RNA-binding domain superfamily |
WH-like_DNA-bd_sf | Gene3D | Winged helix-like DNA-binding domain superfamily |
WH_DNA-bd_sf | SUPERFAMILY | Winged helix DNA-binding domain superfamily |
La_HTH | Pfam | La-type HTH domain |
La_HTH | SMART | La-type HTH domain |
La_HTH | ProSiteProfiles | La-type HTH domain |
Lupus_La | PRINTS | Lupus La protein |
GO Term | Annotation Origin | Type |
---|---|---|
nucleic acid binding | Blast | molecular function |
RNA binding | Blast | molecular function |
protein binding | Blast | molecular function |
nucleus | Blast | cellular component |
nucleoplasm | Blast | cellular component |
cytoplasm | Blast | cellular component |
cytosol | Blast | cellular component |
RNA processing | InterProScan | biological process |
intracellular non-membrane-bounded organelle | Blast | cellular component |
nuclear lumen | Blast | cellular component |
macromolecular complex | Blast | cellular component |
cytoskeletal protein binding | Blast | molecular function |
GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
---|
GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
---|---|---|---|---|
tRNA binding | Hs | molecular function | 56.2 | 2.17e-08 |
nuclear chromosome, telomeric region | Hs | cellular component | 56.2 | 2.17e-08 |
nucleic acid binding | Hs | molecular function | 199 | 7.63e-58 |
RNA binding | Hs | molecular function | 199 | 7.63e-58 |
mRNA binding | Hs | molecular function | 56.2 | 2.17e-08 |
protein binding | Hs | molecular function | 199 | 7.63e-58 |
nucleus | Hs | cellular component | 199 | 7.63e-58 |
nucleoplasm | Hs | cellular component | 68.2 | 5.23e-12 |
cytoplasm | Hs | cellular component | 199 | 7.63e-58 |
cytosol | Hs | cellular component | 68.2 | 5.23e-12 |
polysome | Hs | cellular component | 199 | 7.63e-58 |
poly(U) RNA binding | Hs | molecular function | 56.2 | 2.17e-08 |
myosin binding | Hs | molecular function | 199 | 7.63e-58 |
intracellular ribonucleoprotein complex | Hs | cellular component | 199 | 7.63e-58 |
RNA stem-loop binding | Hs | molecular function | 199 | 7.63e-58 |
mRNA 5'-UTR binding | Hs | molecular function | 199 | 7.63e-58 |
sequence-specific mRNA binding | Hs | molecular function | 199 | 7.63e-58 |
GO Term | Analysis | Type | e-value |
---|---|---|---|
nucleic acid binding | SUPERFAMILY | molecular function | 8.93E-5 |
RNA binding | PRINTS | molecular function | 9.0E-7 |
nucleus | PRINTS | cellular component | 9.0E-7 |
RNA processing | PRINTS | biological process | 9.0E-7 |