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GENE CARD

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Gene Card

Best human hits

RORA; RORB; RORC

Species

P.mammillata

Unique Gene ID

Phmamm.g00011119

Gene Model ID

Phmamm.CG.MTP2014.S672.g11119

Location

S672:50818..57998

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S672.g11119.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

8 results

AHC0AAA50YA05

Plate: Plate_50_A05

AHC0AAA103YA12

Plate: Plate_103_A12

AHC0AAA122YO18

Plate: Plate_122_O18

AHC0AAA96YP23

Plate: Plate_96_P23

AHC0AAA182YJ01

Plate: Plate_182_J01

AHC0AAA202YP21

Plate: Plate_202_P21

AHC0AAA219YC04

Plate: Plate_219_C04

AHC0AAA226YD13

Plate: Plate_226_D13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term Analysis Definition
ThyrH_rcpt PRINTS Thyroid hormone receptor
Znf_hrmn_rcpt ProSitePatterns Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt PRINTS Zinc finger, nuclear hormone receptor-type
NHR_like_dom_sf SUPERFAMILY Nuclear hormone receptor-like domain superfamily
Znf_hrmn_rcpt ProSiteProfiles Zinc finger, nuclear hormone receptor-type
Nucl_hrmn_rcpt_lig-bd ProSiteProfiles Nuclear hormone receptor, ligand-binding domain
Nuclear_hrmn_rcpt PRINTS Nuclear hormone receptor
Znf_hrmn_rcpt SMART Zinc finger, nuclear hormone receptor-type
Nucl_hrmn_rcpt_lig-bd SMART Nuclear hormone receptor, ligand-binding domain
Nucl_hrmn_rcpt_lig-bd Pfam Nuclear hormone receptor, ligand-binding domain
Znf_hrmn_rcpt Pfam Zinc finger, nuclear hormone receptor-type
Znf_NHR/GATA Gene3D Zinc finger, NHR/GATA-type

GOSlim

21 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
transcription factor binding Blast molecular function
zinc ion binding Blast molecular function
nuclear body Blast cellular component
sequence-specific DNA binding Blast molecular function
metal ion binding Blast molecular function
transcription regulatory region sequence-specific DNA binding Blast molecular function
signal transduction Blast biological process
response to lipid Blast biological process
signaling receptor activity Blast molecular function
cellular response to organic substance Blast biological process
organic cyclic compound binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 379 1.35e-122
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 382 7.09e-125
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 382 7.09e-125
core promoter sequence-specific DNA binding Hs molecular function 379 1.35e-122
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 382 7.09e-125
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 354 2.86e-113
transcription corepressor binding Hs molecular function 379 1.35e-122
transcription coactivator binding Hs molecular function 379 1.35e-122
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 379 1.35e-122
DNA binding Hs molecular function 382 7.09e-125
transcription factor activity, sequence-specific DNA binding Hs molecular function 382 7.09e-125
steroid hormone receptor activity Hs molecular function 382 7.09e-125
nuclear receptor activity Hs molecular function 382 7.09e-125
protein binding Hs molecular function 382 7.09e-125
nucleus Hs cellular component 382 7.09e-125
nucleoplasm Hs cellular component 382 7.09e-125
beta-catenin binding Hs molecular function 379 1.35e-122
transcription factor binding Hs molecular function 382 7.09e-125
oxysterol binding Hs molecular function 379 1.35e-122
zinc ion binding Hs molecular function 382 7.09e-125
nuclear body Hs cellular component 354 2.86e-113
sequence-specific DNA binding Hs molecular function 382 7.09e-125
metal ion binding Hs molecular function 382 7.09e-125
transcription factor activity, direct ligand regulated sequence-specific DNA binding Hs molecular function 379 1.35e-122

GO (InterProScan)

9 results

GO Term Analysis Type e-value
DNA binding PRINTS molecular function 1.2E-19
transcription factor activity, sequence-specific DNA binding SMART molecular function 2.9E-39
steroid hormone receptor activity PRINTS molecular function 1.2E-19
nucleus SMART cellular component 2.9E-39
regulation of transcription, DNA-templated SMART biological process 2.9E-39
zinc ion binding SMART molecular function 2.9E-39
steroid hormone mediated signaling pathway SMART biological process 7.3E-24
sequence-specific DNA binding SMART molecular function 2.9E-39
thyroid hormone receptor activity PRINTS molecular function 8.1E-8

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