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GENE CARD

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Gene Card

Best human hits

CDK12; CDK13; CDK9

Species

P.mammillata

Unique Gene ID

Phmamm.g00002419

Gene Model ID

Phmamm.CG.MTP2014.S68.g02419

Location

S68:168475..184400

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

22 results

AHC0AAA12YD06

Plate: Plate_12_D06

AHC0AAA14YP03

Plate: Plate_14_P03

AHC0AAA18YL07

Plate: Plate_18_L07

AHC0AAA7YD19

Plate: Plate_7_D19

AHC0AAA44YD19

Plate: Plate_44_D19

AHC0AAA62YF13

Plate: Plate_62_F13

AHC0AAA63YC04

Plate: Plate_63_C04

AHC0AAA69YL01

Plate: Plate_69_L01

AHC0AAA108YM21

Plate: Plate_108_M21

AHC0AAA115YC21

Plate: Plate_115_C21

AHC0AAA137YF14

Plate: Plate_137_F14

AHC0AAA139YL11

Plate: Plate_139_L11

AHC0AAA146YN10

Plate: Plate_146_N10

AHC0AAA155YI19

Plate: Plate_155_I19

AHC0AAA87YA05

Plate: Plate_87_A05

AHC0AAA172YA18

Plate: Plate_172_A18

AHC0AAA191YO12

Plate: Plate_191_O12

AHC0AAA195YN13

Plate: Plate_195_N13

AHC0AAA196YF02

Plate: Plate_196_F02

AHC0AAA221YH17

Plate: Plate_221_H17

AHC0AAA246YL05

Plate: Plate_246_L05

AHC0AAA263YG19

Plate: Plate_263_G19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Prot_kinase_dom ProSiteProfiles Protein kinase domain
Prot_kinase_dom Pfam Protein kinase domain
Prot_kinase_dom SMART Protein kinase domain
Kinase-like_dom_sf SUPERFAMILY Protein kinase-like domain superfamily
Ser/Thr_kinase_AS ProSitePatterns Serine/threonine-protein kinase, active site

GOSlim

38 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
RNA binding Blast molecular function
protein kinase activity Blast molecular function
protein serine/threonine kinase activity Blast molecular function
protein binding Blast molecular function
ATP binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
Golgi apparatus Blast cellular component
cytosol Blast cellular component
protein phosphorylation InterProScan biological process
transcription factor binding Blast molecular function
membrane Blast cellular component
kinase activity Blast molecular function
nuclear speck Blast cellular component
transferase activity Blast molecular function
protein kinase binding Blast molecular function
transcription regulatory region DNA binding Blast molecular function
nucleolus Blast cellular component
intracellular part Blast cellular component
macromolecular complex Blast cellular component
cell cycle Blast biological process
molecular transducer activity Blast molecular function
intracellular non-membrane-bounded organelle Blast cellular component
nucleoplasm part Blast cellular component
nuclear body Blast cellular component
nuclear part Blast cellular component
cytoplasmic part Blast cellular component
intracellular organelle part Blast cellular component
cytoplasmic vesicle Blast cellular component
endomembrane system Blast cellular component
intracellular organelle lumen Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

39 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 634 0.0
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 281 1.01e-84
transcription coactivator binding Hs molecular function 281 1.01e-84
fibrillar center Hs cellular component 634 0.0
cyclin K-CDK12 complex Hs cellular component 634 0.0
cyclin K-CDK13 complex Hs cellular component 626 0.0
DNA binding Hs molecular function 281 1.01e-84
chromatin binding Hs molecular function 281 1.01e-84
RNA binding Hs molecular function 626 0.0
protein kinase activity Hs molecular function 634 0.0
protein serine/threonine kinase activity Hs molecular function 634 0.0
cyclin-dependent protein serine/threonine kinase activity Hs molecular function 634 0.0
protein binding Hs molecular function 634 0.0
ATP binding Hs molecular function 634 0.0
extracellular region Hs cellular component 626 0.0
extracellular space Hs cellular component 626 0.0
nucleus Hs cellular component 634 0.0
nucleoplasm Hs cellular component 634 0.0
chromosome Hs cellular component 634 0.0
cytoplasm Hs cellular component 281 1.01e-84
Golgi apparatus Hs cellular component 626 0.0
cytosol Hs cellular component 626 0.0
transcription elongation factor complex Hs cellular component 281 1.01e-84
cyclin/CDK positive transcription elongation factor complex Hs cellular component 634 0.0
transcription factor binding Hs molecular function 634 0.0
RNA polymerase II carboxy-terminal domain kinase activity Hs molecular function 634 0.0
membrane Hs cellular component 281 1.01e-84
kinase activity Hs molecular function 634 0.0
PML body Hs cellular component 281 1.01e-84
nuclear speck Hs cellular component 634 0.0
transferase activity Hs molecular function 634 0.0
snRNA binding Hs molecular function 281 1.01e-84
protein kinase binding Hs molecular function 634 0.0
nuclear cyclin-dependent protein kinase holoenzyme complex Hs cellular component 634 0.0
cyclin binding Hs molecular function 634 0.0
cytoplasmic ribonucleoprotein granule Hs cellular component 281 1.01e-84
transcription regulatory region DNA binding Hs molecular function 634 0.0
7SK snRNA binding Hs molecular function 281 1.01e-84
ficolin-1-rich granule lumen Hs cellular component 626 0.0

GO (InterProScan)

3 results

GO Term Analysis Type e-value
protein kinase activity SMART molecular function 2.8E-94
ATP binding SMART molecular function 2.8E-94
protein phosphorylation SMART biological process 2.8E-94