Aniseed - Gene card

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

4 results

AHC0AAA259YN06

Plate: Plate_259_N06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
Znf_FYVE_PHD	SUPERFAMILY	Zinc finger, FYVE/PHD-type
Znf_PHD	SMART	Zinc finger, PHD-type
Znf_PHD-finger	ProSiteProfiles	Zinc finger, PHD-finger
Znf_C2H2_type	SMART	Zinc finger C2H2-type
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
Znf_PHD-finger	Pfam	Zinc finger, PHD-finger
Znf_RING/FYVE/PHD	Gene3D	Zinc finger, RING/FYVE/PHD-type
Znf_C2H2_type	ProSiteProfiles	Zinc finger C2H2-type
Requiem/DPF_N_dom	Pfam	Requiem/DPF N-terminal domain

GOSlim

23 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
nucleic acid binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
centrosome	Orthology	cellular component
cytosol	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
apoptotic process	Orthology	biological process
nervous system development	Orthology	biological process
zinc ion binding	Orthology	molecular function
intracellular membrane-bounded organelle	Orthology	cellular component
metal ion binding	Orthology	molecular function
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
organelle organization	Orthology	biological process
macromolecular complex	Orthology	cellular component
neuron part	Orthology	cellular component
signal transduction	Orthology	biological process

GO (Orthology)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear chromatin	Hs	cellular component
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
centrosome	Hs	cellular component
cytosol	Hs	cellular component
chromatin organization	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
apoptotic process	Hs	biological process
nervous system development	Hs	biological process
zinc ion binding	Hs	molecular function
intracellular membrane-bounded organelle	Hs	cellular component
metal ion binding	Hs	molecular function
nBAF complex	Hs	cellular component
apoptotic signaling pathway	Hs	biological process

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromatin	Hs	cellular component	273	1.68e-88
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	273	1.68e-88
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	273	1.68e-88
nucleic acid binding	Hs	molecular function	306	2.23e-101
protein binding	Hs	molecular function	273	1.68e-88
nucleus	Hs	cellular component	306	2.23e-101
nucleoplasm	Hs	cellular component	273	1.68e-88
cytoplasm	Hs	cellular component	306	2.23e-101
centrosome	Hs	cellular component	273	1.68e-88
cytosol	Hs	cellular component	273	1.68e-88
zinc ion binding	Hs	molecular function	306	2.23e-101
intracellular membrane-bounded organelle	Hs	cellular component	273	1.68e-88
metal ion binding	Hs	molecular function	306	2.23e-101
nBAF complex	Hs	cellular component	306	2.23e-101

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	0.0039

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences