Gene Card
Best human hits
SF3A1; SFSWAP
Species
Unique Gene ID
Phmamm.g00011653
Gene Model ID
Phmamm.CG.MTP2014.S743.g11653
Location
S743:57291..73744
Transcript Models and Sequences
Phmamm.CG.MTP2014.S743.g11653.01.t
Phmamm.CG.MTP2014.S743.g11653.02.t
Genoscope Yasuo Villefranche
9 results
AHC0AAA4YO17
Plate: Plate_4_O17
AHC0AAA7YM19
Plate: Plate_7_M19
AHC0AAA58YE21
Plate: Plate_58_E21
AHC0AAA79YI03
Plate: Plate_79_I03
AHC0AAA80YI02
Plate: Plate_80_I02
AHC0AAA121YE12
Plate: Plate_121_E12
AHC0AAA126YF15
Plate: Plate_126_F15
AHC0AAA146YC20
Plate: Plate_146_C20
AHC0AAA153YL15
Plate: Plate_153_L15
n/a
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The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
7 results
| IPR Term | Analysis | Definition |
|---|---|---|
| SWAP/Surp_sf | Gene3D | SWAP/Surp superfamily |
| SWAP_N_domain | SMART | Suppressor of white apricot N-terminal domain |
| SWAP_N_domain | Pfam | Suppressor of white apricot N-terminal domain |
| Surp | ProSiteProfiles | SWAP/Surp |
| SWAP/Surp_sf | SUPERFAMILY | SWAP/Surp superfamily |
| Surp | Pfam | SWAP/Surp |
| Surp | SMART | SWAP/Surp |
GOSlim
14 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| mRNA splicing, via spliceosome | Orthology | biological process |
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Blast | cellular component |
| transcription, DNA-templated | Orthology | biological process |
| regulation of transcription, DNA-templated | Orthology | biological process |
| RNA processing | Orthology | biological process |
| mRNA processing | Orthology | biological process |
| RNA splicing | Orthology | biological process |
| nuclear speck | Blast | cellular component |
| negative regulation of gene expression | Orthology | biological process |
| nuclear part | Blast | cellular component |
| macromolecular complex | Blast | cellular component |
GO (Orthology)
11 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| alternative mRNA splicing, via spliceosome | Hs | biological process |
| mRNA 5'-splice site recognition | Hs | biological process |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| transcription, DNA-templated | Hs | biological process |
| regulation of transcription, DNA-templated | Hs | biological process |
| RNA processing | Hs | biological process |
| mRNA processing | Hs | biological process |
| RNA splicing | Hs | biological process |
| negative regulation of mRNA splicing, via spliceosome | Hs | biological process |
GO (Blast)
10 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| RNA binding | Hs | molecular function | 247 | 9.36e-69 |
| protein binding | Hs | molecular function | 247 | 9.36e-69 |
| nucleus | Hs | cellular component | 247 | 9.36e-69 |
| nucleoplasm | Hs | cellular component | 46.6 | 7.11e-05 |
| spliceosomal complex | Hs | cellular component | 46.6 | 7.11e-05 |
| U2-type spliceosomal complex | Hs | cellular component | 46.6 | 7.11e-05 |
| U2 snRNP | Hs | cellular component | 46.6 | 7.11e-05 |
| nuclear speck | Hs | cellular component | 46.6 | 7.11e-05 |
| U2-type prespliceosome | Hs | cellular component | 46.6 | 7.11e-05 |
| catalytic step 2 spliceosome | Hs | cellular component | 46.6 | 7.11e-05 |
GO (InterProScan)
2 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| RNA binding | Gene3D | molecular function | 6.0E-26 |
| RNA processing | Gene3D | biological process | 6.0E-26 |
