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GENE CARD

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Gene Card

Best human hits

NELFE

Species

P.mammillata

Unique Gene ID

Phmamm.g00012025

Gene Model ID

Phmamm.CG.MTP2014.S799.g12025

Location

S799:17158..21802

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S799.g12025.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

26 results

AHC0AAA15YA01

Plate: Plate_15_A01

AHC0AAA44YG15

Plate: Plate_44_G15

AHC0AAA46YN14

Plate: Plate_46_N14

AHC0AAA48YF11

Plate: Plate_48_F11

AHC0AAA62YK11

Plate: Plate_62_K11

AHC0AAA63YK19

Plate: Plate_63_K19

AHC0AAA105YE10

Plate: Plate_105_E10

AHC0AAA105YJ17

Plate: Plate_105_J17

AHC0AAA111YI16

Plate: Plate_111_I16

AHC0AAA138YK07

Plate: Plate_138_K07

AHC0AAA150YH14

Plate: Plate_150_H14

AHC0AAA155YP17

Plate: Plate_155_P17

AHC0AAA92YJ22

Plate: Plate_92_J22

AHC0AAA98YP19

Plate: Plate_98_P19

AHC0AAA174YM03

Plate: Plate_174_M03

AHC0AAA177YK03

Plate: Plate_177_K03

AHC0AAA182YC14

Plate: Plate_182_C14

AHC0AAA196YF21

Plate: Plate_196_F21

AHC0AAA197YE06

Plate: Plate_197_E06

AHC0AAA213YO22

Plate: Plate_213_O22

AHC0AAA214YB12

Plate: Plate_214_B12

AHC0AAA232YA08

Plate: Plate_232_A08

AHC0AAA255YC21

Plate: Plate_255_C21

AHC0AAA263YL10

Plate: Plate_263_L10

AHC0AAA92YL24

Plate: Plate_92_L24

AHC0AAA98YP17

Plate: Plate_98_P17

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
RRM_dom ProSiteProfiles RNA recognition motif domain
RRM_dom SMART RNA recognition motif domain
NELFE PANTHER Negative elongation factor E
RRM_dom Pfam RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily

GOSlim

22 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
nucleic acid binding Orthology molecular function
chromatin binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
plasma membrane Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
nuclear body Orthology cellular component
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
organelle organization Orthology biological process
cellular protein modification process Orthology biological process
intracellular signal transduction Orthology biological process
positive regulation of signal transduction Orthology biological process
protein phosphorylation Orthology biological process
mRNA processing Orthology biological process
negative regulation of gene expression Orthology biological process

GO (Orthology)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
nucleic acid binding Hs molecular function
chromatin binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
plasma membrane Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription elongation from RNA polymerase II promoter Hs biological process
nuclear body Hs cellular component
NELF complex Hs cellular component
negative regulation of transcription elongation from RNA polymerase II promoter Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
positive regulation of histone H3-K4 methylation Hs biological process
positive regulation of ERK1 and ERK2 cascade Hs biological process
negative regulation of mRNA polyadenylation Hs biological process

GO (Blast)

9 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleic acid binding Hs molecular function 109 1.64e-27
chromatin binding Hs molecular function 109 1.64e-27
RNA binding Hs molecular function 109 1.64e-27
protein binding Hs molecular function 109 1.64e-27
nucleus Hs cellular component 109 1.64e-27
nucleoplasm Hs cellular component 109 1.64e-27
plasma membrane Hs cellular component 109 1.64e-27
nuclear body Hs cellular component 109 1.64e-27
NELF complex Hs cellular component 109 1.64e-27

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 2.31E-17
regulation of transcription, DNA-templated PANTHER biological process 6.4E-58
NELF complex PANTHER cellular component 6.4E-58