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GENE CARD

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Gene Card

Best human hits

GATA3; GATA4; GATA6

Species

P.mammillata

Unique Gene ID

Phmamm.g00012260

Gene Model ID

Phmamm.CG.MTP2014.S835.g12260

Location

S835:9248..13743

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S835.g12260.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

13 results

AHC0AAA13YO20

Plate: Plate_13_O20

AHC0AAA18YB03

Plate: Plate_18_B03

AHC0AAA29YJ07

Plate: Plate_29_J07

AHC0AAA29YM20

Plate: Plate_29_M20

AHC0AAA29YP22

Plate: Plate_29_P22

AHC0AAA41YC02

Plate: Plate_41_C02

AHC0AAA105YL14

Plate: Plate_105_L14

AHC0AAA111YE07

Plate: Plate_111_E07

AHC0AAA124YO21

Plate: Plate_124_O21

AHC0AAA165YD16

Plate: Plate_165_D16

AHC0AAA169YB07

Plate: Plate_169_B07

AHC0AAA177YN24

Plate: Plate_177_N24

AHC0AAA208YO04

Plate: Plate_208_O04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Znf_GATA Pfam Zinc finger, GATA-type
Znf_GATA ProSiteProfiles Zinc finger, GATA-type
Znf_GATA SMART Zinc finger, GATA-type
Znf_GATA CDD Zinc finger, GATA-type
Znf_GATA PRINTS Zinc finger, GATA-type
Znf_GATA ProSitePatterns Zinc finger, GATA-type
Znf_NHR/GATA Gene3D Zinc finger, NHR/GATA-type

GOSlim

29 results

GO Term Annotation Origin Type
transcription regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
core promoter proximal region sequence-specific DNA binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
transcription coactivator activity Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
transcription factor binding Blast molecular function
zinc ion binding Blast molecular function
nuclear body Blast cellular component
protein kinase binding Blast molecular function
nuclear membrane Blast cellular component
sequence-specific DNA binding Blast molecular function
transcription regulatory region DNA binding Blast molecular function
metal ion binding Blast molecular function
protein dimerization activity Blast molecular function
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
receptor binding Blast molecular function
intracellular part Blast cellular component
macromolecular complex Blast cellular component
nuclear part Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

39 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nuclear chromatin Hs cellular component 139 1.94e-35
transcription regulatory region sequence-specific DNA binding Hs molecular function 139 1.94e-35
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 151 1.60e-39
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 149 1.13e-37
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 151 1.60e-39
core promoter proximal region sequence-specific DNA binding Hs molecular function 139 1.94e-35
core promoter sequence-specific DNA binding Hs molecular function 139 1.94e-35
transcription factor activity, RNA polymerase II transcription factor binding Hs molecular function 151 1.60e-39
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 139 1.94e-35
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 139 1.94e-35
RNA polymerase II transcription factor binding Hs molecular function 151 1.60e-39
RNA polymerase II repressing transcription factor binding Hs molecular function 149 1.13e-37
enhancer sequence-specific DNA binding Hs molecular function 151 1.60e-39
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 151 1.60e-39
DNA binding Hs molecular function 151 1.60e-39
chromatin binding Hs molecular function 151 1.60e-39
transcription factor activity, sequence-specific DNA binding Hs molecular function 151 1.60e-39
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 149 1.13e-37
transcription coactivator activity Hs molecular function 151 1.60e-39
interleukin-2 receptor binding Hs molecular function 139 1.94e-35
protein binding Hs molecular function 151 1.60e-39
nucleus Hs cellular component 151 1.60e-39
nucleoplasm Hs cellular component 151 1.60e-39
transcription factor complex Hs cellular component 149 1.13e-37
transcription factor binding Hs molecular function 151 1.60e-39
zinc ion binding Hs molecular function 151 1.60e-39
nuclear body Hs cellular component 151 1.60e-39
protein kinase binding Hs molecular function 151 1.60e-39
nuclear membrane Hs cellular component 149 1.13e-37
activating transcription factor binding Hs molecular function 151 1.60e-39
sequence-specific DNA binding Hs molecular function 151 1.60e-39
transcription regulatory region DNA binding Hs molecular function 151 1.60e-39
metal ion binding Hs molecular function 151 1.60e-39
protein dimerization activity Hs molecular function 139 1.94e-35
NFAT protein binding Hs molecular function 151 1.60e-39
co-SMAD binding Hs molecular function 151 1.60e-39
E-box binding Hs molecular function 139 1.94e-35
HMG box domain binding Hs molecular function 139 1.94e-35
RNA polymerase II transcription factor complex Hs cellular component 151 1.60e-39

GO (InterProScan)

4 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding PANTHER molecular function 3.6E-50
regulation of transcription, DNA-templated Gene3D biological process 2.6E-26
zinc ion binding Gene3D molecular function 2.6E-26
sequence-specific DNA binding SMART molecular function 2.8E-23